RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 WDTC1Q8N5D0 677 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 ZNF383Q8NA42 475 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 PPHLN1Q8NEY8 458 aaKnown RBP3.41□□□□□ -1.86
SCFD1-216ENST00000555550 OR2T6Q8NHC8 308 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 USP6NLQ92738 828 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 MTERF3Q96E29 417 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 GIMAP5Q96F15 307 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 PGAM5Q96HS1 289 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 FAM81BQ96LP2 452 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 MYADMQ96S97 322 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 ITPAQ9BY32 194 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 SLA2Q9H6Q3 261 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 HHATLQ9HCP6 504 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 CHMP1AQ9HD42 196 aaPredicted RBP3.41□□□□□ -1.86
SCFD1-216ENST00000555550 EIF2B3Q9NR50 452 aaKnown RBP3.41□□□□□ -1.86
SCFD1-216ENST00000555550 ZDHHC18Q9NUE0 388 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 ATAD3AQ9NVI7 634 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 TAS2R14Q9NYV8 317 aa3.41□□□□□ -1.86
SCFD1-216ENST00000555550 A0A0J9YWU9 116 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 NDUFAF8A1L188 74 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 ELOVL7A1L3X0 281 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 MEIOCA2RUB1 952 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 ZNF197O14709 1029 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 TCERG1O14776 1098 aaKnown RBP3.4□□□□□ -1.87
SCFD1-216ENST00000555550 RSL1D1O76021 490 aaKnown RBP3.4□□□□□ -1.87
SCFD1-216ENST00000555550 EDN1P05305 212 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 ACADMP11310 421 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 GABRB1P18505 474 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 BMXP51813 675 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 KRTAP12-2P59991 146 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 IRX6P78412 446 aaPredicted RBP3.4□□□□□ -1.87
SCFD1-216ENST00000555550 KCNC3Q14003 757 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 BHLHB9Q6PI77 547 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 ZNF554Q86TJ5 538 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 MRGPRDQ8TDS7 321 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 HDAC2Q92769 488 aaKnown RBP3.4□□□□□ -1.87
SCFD1-216ENST00000555550 GMPPAQ96IJ6 420 aaPredicted RBP3.4□□□□□ -1.87
SCFD1-216ENST00000555550 DACH2Q96NX9 599 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 RTP3Q9BQQ7 232 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 SRSF8Q9BRL6 282 aaKnown RBP3.4□□□□□ -1.87
SCFD1-216ENST00000555550 UBXN6Q9BZV1 441 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 SMARCAD1Q9H4L7 1026 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 RPS10P5Q9NQ39 176 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 SEPT11Q9NVA2 429 aaKnown RBP3.4□□□□□ -1.87
SCFD1-216ENST00000555550 RNF215Q9Y6U7 377 aa3.4□□□□□ -1.87
SCFD1-216ENST00000555550 A0A087X002 238 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 A0A087X0M5 115 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 IGLV9-49A0A0B4J1Y8 123 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 PRSS51A0A1B0GVH4 220 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 A0A1B0GX30 115 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 A0A1W2PRB8 838 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 DPEP1P16444 411 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 SP100P23497 879 aaPredicted RBP3.39□□□□□ -1.87
SCFD1-216ENST00000555550 WNT5AP41221 380 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 SP3Q02447 781 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 DLG2Q15700 870 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 PWWP2BQ6NUJ5 590 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 SLC16A9Q7RTY1 509 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 ZNF843Q8N446 348 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 TMEM178AQ8NBL3 297 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 C1orf131Q8NDD1 294 aaKnown RBP3.39□□□□□ -1.87
SCFD1-216ENST00000555550 OR1J1Q8NGS3 322 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 ZNF689Q96CS4 500 aaPredicted RBP3.39□□□□□ -1.87
SCFD1-216ENST00000555550 TRIM51Q9BSJ1 452 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 TRIM15Q9C019 465 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 ERVMER34-1Q9H9K5 563 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 ZNF71Q9NQZ8 489 aaPredicted RBP3.39□□□□□ -1.87
SCFD1-216ENST00000555550 NPAP1Q9NZP6 1156 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 PAK5Q9P286 719 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 KLHL8Q9P2G9 620 aaPredicted RBP3.39□□□□□ -1.87
SCFD1-216ENST00000555550 AMACRQ9UHK6 382 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 PYGO1Q9Y3Y4 419 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 RUSC2Q8N2Y8 1516 aa3.39□□□□□ -1.87
SCFD1-216ENST00000555550 DISP3Q9P2K9 1392 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 IGHV4-4A0A075B6R2 117 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 PI4KAP2A4QPH2 592 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 PGPEP1LA6NFU8 196 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 LRRC72A6NJI9 287 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 SLCO1B7G3V0H7 640 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 OR2C1O95371 312 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 NADKO95544 446 aaPredicted RBP3.38□□□□□ -1.87
SCFD1-216ENST00000555550 FAM157CP0CG43 387 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 SLC6A12P48065 614 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 ARF3P61204 181 aaPredicted RBP3.38□□□□□ -1.87
SCFD1-216ENST00000555550 ARF1P84077 181 aaKnown RBP3.38□□□□□ -1.87
SCFD1-216ENST00000555550 CDR2Q01850 454 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 LGALS3BPQ08380 585 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 GPR17Q13304 367 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 HNRNPDQ14103 355 aaKnown RBP3.38□□□□□ -1.87
SCFD1-216ENST00000555550 TAF13Q15543 124 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 FAM98BQ52LJ0 330 aaKnown RBP3.38□□□□□ -1.87
SCFD1-216ENST00000555550 DCAF10Q5QP82 559 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 ADAMTSL4-AS1Q5T5F5 129 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 CCDC30Q5VVM6 783 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 FAM109BQ6ICB4 259 aaPredicted RBP3.38□□□□□ -1.87
SCFD1-216ENST00000555550 INTS8Q75QN2 995 aaKnown RBP3.38□□□□□ -1.87
SCFD1-216ENST00000555550 KBTBD8Q8NFY9 601 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 SUSD6Q92537 303 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 MPP4Q96JB8 637 aa3.38□□□□□ -1.87
SCFD1-216ENST00000555550 MAGED4Q96JG8 741 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms