RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 UNC93AQ86WB7 457 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 CARNMT1Q8N4J0 409 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 LRRC17Q8N6Y2 441 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 RASSF5Q8WWW0 418 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 MYRFLQ96LU7 910 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 NSUN5Q96P11 429 aaKnown RBP14.04□□□□□ -0.16
LIMS1-215ENST00000544547 PANX1Q96RD7 426 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 CGREF1Q99674 301 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 OPTCQ9UBM4 332 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 EIF2B4Q9UI10 523 aaKnown RBP14.04□□□□□ -0.16
LIMS1-215ENST00000544547 ATP6V1HQ9UI12 483 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 H0YAE9 185 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 H7C4K7 107 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 ITGALP20701 1170 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 ARL4DP49703 201 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 MAD2L1Q13257 205 aaPredicted RBP14.04□□□□□ -0.16
LIMS1-215ENST00000544547 ARHGAP15Q53QZ3 475 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 PLPPR4Q7Z2D5 763 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 GLT6D1Q7Z4J2 308 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 SVOPLQ8N434 492 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 OR13J1Q8NGT2 312 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 MYOCQ99972 504 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 SEMA3CQ99985 751 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 CIPCQ9C0C6 399 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 GALPQ9UBC7 116 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 SNX7Q9UNH6 387 aa14.04□□□□□ -0.16
LIMS1-215ENST00000544547 FAM172BPA6NC97 362 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 NUAK1O60285 661 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 PGK1P00558 417 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 PRLP01236 227 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 ALDH2P05091 517 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 CCNYL3P0C7X3 344 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 PSKH1P11801 424 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 CAPN3P20807 821 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 GSTM2P28161 218 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 CDH5P33151 784 aaPredicted RBP14.03□□□□□ -0.16
LIMS1-215ENST00000544547 CDC42P60953 191 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 TUBA1BP68363 451 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 PITX1P78337 314 aaPredicted RBP14.03□□□□□ -0.16
LIMS1-215ENST00000544547 ZNF267Q14586 743 aaPredicted RBP14.03□□□□□ -0.16
LIMS1-215ENST00000544547 PLEKHM3Q6ZWE6 761 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 TUBA1AQ71U36 451 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 C1GALT1C1Q96EU7 318 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 LINGO1Q96FE5 620 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 FAM118AQ9NWS6 357 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 CMTM6Q9NX76 183 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 CNTRLQ7Z7A1 2325 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 TCRBV3S1A0A5B6 114 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 PDHXO00330 501 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 URODP06132 367 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 PROZP22891 400 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 WEE1P30291 646 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 IDUAP35475 653 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 MAPK12P53778 367 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 AURKBQ96GD4 344 aaPredicted RBP14.03□□□□□ -0.16
LIMS1-215ENST00000544547 OR2B2Q9GZK3 357 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 RBM38Q9H0Z9 239 aaKnown RBP14.03□□□□□ -0.16
LIMS1-215ENST00000544547 STARD7Q9NQZ5 370 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 RCOR3Q9P2K3 495 aaPredicted RBP14.03□□□□□ -0.16
LIMS1-215ENST00000544547 ING4Q9UNL4 249 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 PCDHGA8Q9Y5G5 932 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 CITO14578 2027 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 TTC24A2A3L6 582 aaPredicted RBP14.03□□□□□ -0.16
LIMS1-215ENST00000544547 SLC1A7O00341 560 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 IFRD1O00458 451 aaPredicted RBP14.03□□□□□ -0.16
LIMS1-215ENST00000544547 ENPP3O14638 875 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 CRYZL1O95825 349 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 HERVK_113P63132 956 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 KRT74Q7RTS7 529 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 AMIGO1Q86WK6 493 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 CADM2Q8N3J6 435 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 ARRDC4Q8NCT1 418 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 ARNTL2Q8WYA1 636 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 PIK3R3Q92569 461 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 PPP3R2Q96LZ3 170 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 GPR21Q99679 349 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 ERVK-6Q9BXR3 956 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 CCDC177Q9NQR7 707 aaPredicted RBP14.03□□□□□ -0.16
LIMS1-215ENST00000544547 ARMC1Q9NVT9 282 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 SMPD4Q9NXE4 827 aa14.03□□□□□ -0.16
LIMS1-215ENST00000544547 ARRB2P32121 409 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 LRP8Q14114 963 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 LBX2Q6XYB7 198 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 PTCHD4Q6ZW05 846 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 FRS2Q8WU20 508 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 FZD8Q9H461 694 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 TAS2R9Q9NYW1 312 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 SSR3Q9UNL2 185 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 RNF6Q9Y252 685 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 TMEM98Q9Y2Y6 226 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 PPP2R3BQ9Y5P8 575 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 SRCAPQ6ZRS2 3230 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 MGAT4DA6NG13 374 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 ARVCFO00192 962 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 HOXA2O43364 376 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 CRATP43155 626 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 SPATC1Q76KD6 591 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 PHC2Q8IXK0 858 aa14.02□□□□□ -0.16
LIMS1-215ENST00000544547 H2AFY2Q9P0M6 372 aaPredicted RBP14.02□□□□□ -0.16
LIMS1-215ENST00000544547 TESMINQ9Y4I5 508 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms