RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 LSAMPQ13449 338 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 CNPY1Q3B7I2 92 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 VPS26BQ4G0F5 336 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 LIN52Q52LA3 116 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 ELMSAN1Q6PJG2 1045 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 CRTC1Q6UUV9 634 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 MILR1Q7Z6M3 343 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 HID1Q8IV36 788 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 RASGRP3Q8IV61 690 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 KLHDC8AQ8IYD2 350 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 TBC1D21Q8IYX1 336 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 USP7Q93009 1102 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 VOPP1Q96AW1 172 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 EME1Q96AY2 570 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 METTL2AQ96IZ6 378 aaKnown RBP9.7□□□□□ -0.86
SS18-205ENST00000542420 COPS8Q99627 209 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 TM6SF2Q9BZW4 377 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 PKD2L2Q9NZM6 624 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 CNOT6Q9ULM6 557 aaKnown RBP9.7□□□□□ -0.86
SS18-205ENST00000542420 EIF3LQ9Y262 564 aaKnown RBP9.7□□□□□ -0.86
SS18-205ENST00000542420 RWDD3Q9Y3V2 267 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 CCL27Q9Y4X3 112 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 PCDHB3Q9Y5E6 796 aa9.7□□□□□ -0.86
SS18-205ENST00000542420 DHRS12A0PJE2 317 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 TAPBPO15533 448 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 TULP3O75386 442 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 CLDN7O95471 211 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 PRAMEF12O95522 483 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 CAPN1P07384 714 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 FAM58BPP0C7Q3 252 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 LINC00271P0C7V0 271 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 AP1S2P56377 157 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 UBE3AQ05086 875 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 CHRNA6Q15825 494 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 DGKKQ5KSL6 1271 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 LETMD1Q6P1Q0 360 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 FBXL19Q6PCT2 694 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 FNDC5Q8NAU1 212 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 OR4F6Q8NGB9 312 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 OR2T11Q8NH01 316 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 PROKR1Q8TCW9 393 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 SP7Q8TDD2 431 aaPredicted RBP9.69□□□□□ -0.86
SS18-205ENST00000542420 CCDC115Q96NT0 180 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 ZBTB18Q99592 522 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 SH3GL1Q99961 368 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 C9orf16Q9BUW7 83 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 PCDHAC1Q9H158 963 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 ALG2Q9H553 416 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 IPPKQ9H8X2 491 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 IL23AQ9NPF7 189 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 PACSIN3Q9UKS6 424 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 ATP11BQ9Y2G3 1177 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 TIMM22Q9Y584 194 aa9.69□□□□□ -0.86
SS18-205ENST00000542420 ZFC3H1O60293 1989 aaKnown RBP9.69□□□□□ -0.86
SS18-205ENST00000542420 K7ERQ8 282 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 SLC9A3R1O14745 358 aaPredicted RBP9.68□□□□□ -0.86
SS18-205ENST00000542420 ANKRD28O15084 1053 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 UGDHO60701 494 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 HNRNPA1P09651 372 aaKnown RBP eCLIP9.68□□□□□ -0.86
SS18-205ENST00000542420 ATP6V1B2P21281 511 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 FASP25445 335 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 PRDX3P30048 256 aaKnown RBP9.68□□□□□ -0.86
SS18-205ENST00000542420 RPL5P46777 297 aaKnown RBP9.68□□□□□ -0.86
SS18-205ENST00000542420 CCR3P51677 355 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 DIO3P55073 304 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 PCDH1Q08174 1060 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 PWP1Q13610 501 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 BOP1Q14137 746 aaKnown RBP9.68□□□□□ -0.86
SS18-205ENST00000542420 LRRC36Q1X8D7 754 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 BORAQ6PGQ7 559 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 CHERPQ8IWX8 916 aaKnown RBP9.68□□□□□ -0.86
SS18-205ENST00000542420 SFRP1Q8N474 314 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 RNF148Q8N7C7 305 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 CDYL2Q8N8U2 506 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 TRPV3Q8NET8 790 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 CENPNQ96H22 339 aaPredicted RBP9.68□□□□□ -0.86
SS18-205ENST00000542420 SMIM14Q96QK8 99 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 TMEM79Q9BSE2 394 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 SLC12A9Q9BXP2 914 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 OSBPL6Q9BZF3 934 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 SLC32A1Q9H598 525 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 C11orf49Q9H6J7 331 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 SARS2Q9NP81 518 aaKnown RBP9.68□□□□□ -0.86
SS18-205ENST00000542420 AGPAT4Q9NRZ5 378 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 WWOXQ9NZC7 414 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 DKK3Q9UBP4 350 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 TMED5Q9Y3A6 229 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 ANGPTL3Q9Y5C1 460 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 A0A1B0GTL3 188 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 ASPDHA6ND91 283 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 NCF1BA6NI72 391 aaPredicted RBP9.68□□□□□ -0.86
SS18-205ENST00000542420 NCF1CA8MVU1 366 aaPredicted RBP9.68□□□□□ -0.86
SS18-205ENST00000542420 CFAP99D6REC4 459 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 ARPC2O15144 300 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 KRT6AP02538 564 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 KRT6BP04259 564 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 ASLP04424 464 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 IL6P05231 212 aa9.68□□□□□ -0.86
SS18-205ENST00000542420 PABPC1P11940 636 aaKnown RBP9.68□□□□□ -0.86
SS18-205ENST00000542420 NCF1P14598 390 aaPredicted RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms