RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 NOVP48745 357 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 TMCO2Q7Z6W1 182 aaPredicted RBP13.89□□□□□ -0.19
USP3-204ENST00000540797 RALGPS2Q86X27 583 aaPredicted RBP13.89□□□□□ -0.19
USP3-204ENST00000540797 CCDC103Q8IW40 242 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 KIAA2013Q8IYS2 634 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 C19orf18Q8NEA5 215 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 ZNF184Q99676 751 aaPredicted RBP13.89□□□□□ -0.19
USP3-204ENST00000540797 NUSAP1Q9BXS6 441 aaKnown RBP13.89□□□□□ -0.19
USP3-204ENST00000540797 LRMDAQ9H2I8 198 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 GNEQ9Y223 722 aaKnown RBP13.89□□□□□ -0.19
USP3-204ENST00000540797 RUVBL1Q9Y265 456 aaKnown RBP13.89□□□□□ -0.19
USP3-204ENST00000540797 BAZ2AQ9UIF9 1905 aaKnown RBP13.89□□□□□ -0.19
USP3-204ENST00000540797 A0A0D9SEW6 157 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 TCRBV7S3A2A0A539 114 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 TRIM24O15164 1050 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 STX11O75558 287 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 NFATC2Q13469 925 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 NEK5Q6P3R8 708 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 FAM171BQ6P995 826 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 AMIGO2Q86SJ2 522 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 APLFQ8IW19 511 aaPredicted RBP13.89□□□□□ -0.19
USP3-204ENST00000540797 TTLQ8NG68 377 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 MTERF1Q99551 399 aaKnown RBP13.89□□□□□ -0.19
USP3-204ENST00000540797 ANKHQ9HCJ1 492 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 COQ6Q9Y2Z9 468 aa13.89□□□□□ -0.19
USP3-204ENST00000540797 LGALS3BPQ08380 585 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 UAP1L1Q3KQV9 507 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 TMEM164Q5U3C3 297 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 TMC8Q8IU68 726 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 SAMD14Q8IZD0 417 aaPredicted RBP13.88□□□□□ -0.19
USP3-204ENST00000540797 AVL9Q8NBF6 648 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 FAM98AQ8NCA5 519 aaKnown RBP13.88□□□□□ -0.19
USP3-204ENST00000540797 ZNF33AQ06730 810 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 CACTIN-AS1Q8N1I8 211 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 CADM2Q8N3J6 435 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 ZNF781Q8N8C0 355 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 DDHD1Q8NEL9 900 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 HDHD2Q9H0R4 259 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 A0A087WXM4 84 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 HEPACAM2A8MVW5 462 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 UBXN7O94888 489 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 MLLT3P42568 568 aaPredicted RBP13.88□□□□□ -0.19
USP3-204ENST00000540797 RPL26P61254 145 aaKnown RBP13.88□□□□□ -0.19
USP3-204ENST00000540797 RING1Q06587 406 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 CYP4F3Q08477 520 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 DCAF12L1Q5VU92 463 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 METTL21CQ5VZV1 264 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 ZC3H3Q8IXZ2 948 aaKnown RBP13.88□□□□□ -0.19
USP3-204ENST00000540797 LMX1AQ8TE12 382 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 SMARCD2Q92925 531 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 PYCR2Q96C36 320 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 NMUR2Q9GZQ4 415 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 PRDM8Q9NQV8 689 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 ARL8BQ9NVJ2 186 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 MKL2Q9ULH7 1088 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 RPL26L1Q9UNX3 145 aaKnown RBP13.88□□□□□ -0.19
USP3-204ENST00000540797 PHF24Q9UPV7 400 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 ATXN2Q99700 1313 aaKnown RBP13.88□□□□□ -0.19
USP3-204ENST00000540797 TMEM150CB9EJG8 249 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 HNMTP50135 292 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 ST13P50502 369 aaKnown RBP13.88□□□□□ -0.19
USP3-204ENST00000540797 ITGA1P56199 1179 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 TRIM16LQ309B1 348 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 KLHL12Q53G59 568 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 RNPEPL1Q9HAU8 725 aa13.88□□□□□ -0.19
USP3-204ENST00000540797 CFAP20Q9Y6A4 193 aaKnown RBP13.88□□□□□ -0.19
USP3-204ENST00000540797 BEST1O76090 585 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 PCSK2P16519 638 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 PRAMEF14Q5SWL7 426 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 PRAMEF13Q5VWM6 474 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 GLYATQ6IB77 296 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 GKN2Q86XP6 184 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 TMEM145Q8NBT3 493 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 DDX1Q92499 740 aaKnown RBP13.87□□□□□ -0.19
USP3-204ENST00000540797 NMD3Q96D46 503 aaKnown RBP13.87□□□□□ -0.19
USP3-204ENST00000540797 SLC17A6Q9P2U8 582 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 ZNF840PA6NDX5 716 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 HAS3O00219 553 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 RFPL2O75678 378 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 BCL10O95999 233 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 HOXB6P17509 224 aaKnown RBP13.87□□□□□ -0.19
USP3-204ENST00000540797 PGDP52209 483 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 KRR1Q13601 381 aaKnown RBP13.87□□□□□ -0.19
USP3-204ENST00000540797 DGCR6Q14129 220 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 SUZ12Q15022 739 aaKnown RBP13.87□□□□□ -0.19
USP3-204ENST00000540797 ZNF671Q8TAW3 534 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 DGCR6LQ9BY27 220 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 SLC2A6Q9UGQ3 507 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 TMEM98Q9Y2Y6 226 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 KMOO15229 486 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 IFNGP01579 166 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 FAM182AQ5T1J6 154 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 PHF19Q5T6S3 580 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 ZMIZ2Q8NF64 920 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 ZNF354BQ96LW1 612 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 PEBP4Q96S96 227 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 SGIP1Q9BQI5 828 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 C6orf62Q9GZU0 229 aaPredicted RBP13.87□□□□□ -0.19
USP3-204ENST00000540797 B4GALT6Q9UBX8 382 aa13.87□□□□□ -0.19
USP3-204ENST00000540797 CDC14AQ9UNH5 594 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms