RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CCDC168Q8NDH2 2452 aa12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 DIDO1Q9BTC0 2240 aaKnown RBP12.29□□□□□ -0.44
CLSTN3-208ENST00000538933 POLEQ07864 2286 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 A0A0J9YYE9 177 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 TSPAN11A1L157 253 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 HEATR9A2RTY3 570 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 BHMG1C9JSJ3 638 aaPredicted RBP12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 ZW10O43264 779 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 FZD6O60353 706 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 AVILO75366 819 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 CRTAMO95727 393 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 TRBC1P01850 177 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 PIRTP0C851 137 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 GM2AP17900 193 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 ELP6Q0PNE2 266 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 MAP7Q14244 749 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 ERV3-1Q14264 604 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 IHHQ14623 411 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 BRD3Q15059 726 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 QPCTQ16769 361 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 UGP2Q16851 508 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 HP1BP3Q5SSJ5 553 aaPredicted RBP12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 FNBP1LQ5T0N5 605 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 CEACAM20Q6UY09 585 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 PALM2Q8IXS6 379 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 PYROXD1Q8WU10 500 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 ECHDC3Q96DC8 303 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 LRRC39Q96DD0 335 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 STAMBPL1Q96FJ0 436 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 CFAP36Q96G28 342 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 NSMCE3Q96MG7 304 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 PWWP2AQ96N64 755 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 TRIB3Q96RU7 358 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 ZPBPQ9BS86 351 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 ARNT2Q9HBZ2 717 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 MLXIPLQ9NP71 852 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 SYBUQ9NX95 663 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 TAAR2Q9P1P5 351 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 RAB21Q9UL25 225 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 CHMP2BQ9UQN3 213 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 RPS6KL1Q9Y6S9 549 aa12.28□□□□□ -0.44
CLSTN3-208ENST00000538933 DNHD1Q96M86 4753 aa12.27□□□□□ -0.44
CLSTN3-208ENST00000538933 C1orf232A0A0U1RR37 186 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 PRSS38A1L453 326 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 C2orf81A6NN90 581 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 CACNB4O00305 520 aaPredicted RBP12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 BANF1O75531 89 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 DNAJB5O75953 348 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 PRLP01236 227 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 KELP23276 732 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 ADRA1DP25100 572 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 AK4P27144 223 aaPredicted RBP12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 MMP12P39900 470 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 PDE1BQ01064 536 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 INPP5JQ15735 1006 aaPredicted RBP12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 PRR30Q53SZ7 412 aaPredicted RBP12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 PCID2Q5JVF3 399 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 EMBQ6PCB8 327 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 ZNF534Q76KX8 674 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 CAND1Q86VP6 1230 aaKnown RBP12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 ZSWIM9Q86XI8 627 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 ANKMY2Q8IV38 441 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 PRR7Q8TB68 274 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 PTCD2Q8WV60 388 aaKnown RBP12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 PIH1D2Q8WWB5 315 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 NAT9Q9BTE0 207 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 TRIM55Q9BYV6 548 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 PHACTR1Q9C0D0 580 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 TRABDQ9H4I3 376 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 POLHQ9Y253 713 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 ZNF711Q9Y462 761 aa12.27□□□□□ -0.45
CLSTN3-208ENST00000538933 MAGEB16A2A368 324 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 CCDC78A2IDD5 438 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 A8MX80 341 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 RECQL5O94762 991 aaPredicted RBP12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 CEACAM5P06731 702 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 MYBL2P10244 700 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 PGAM1P18669 254 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 PAMP19021 973 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 ECHS1P30084 290 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 VIPR1P32241 457 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 ELK3P41970 407 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 MAGEA4P43358 317 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 CRADDP78560 199 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 RALGDSQ12967 914 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 CCDC38Q502W7 563 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 DENND5AQ6IQ26 1287 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 CAPN12Q6ZSI9 719 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 NLRP9Q7RTR0 991 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 SLC34A3Q8N130 599 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 ESX1Q8N693 406 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 Q8NA96 180 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 FBXO36Q8NEA4 188 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 BRSK1Q8TDC3 778 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 UBLCP1Q8WVY7 318 aaPredicted RBP12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 SCRN2Q96FV2 425 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 TTC25Q96NG3 672 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 VPS37BQ9H9H4 285 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 MAGEE1Q9HCI5 957 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms