RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 PROX2Q3B8N5 592 aa28.97■■■□□ 2.23
LIMCH1-211ENST00000509638 TTLL9Q3SXZ7 439 aa28.97■■■□□ 2.23
LIMCH1-211ENST00000509638 C14orf28Q4W4Y0 310 aa28.97■■■□□ 2.23
LIMCH1-211ENST00000509638 OGFOD3Q6PK18 319 aa28.97■■■□□ 2.23
LIMCH1-211ENST00000509638 PIP4P1Q86T03 277 aa28.97■■■□□ 2.23
LIMCH1-211ENST00000509638 PDZD3Q86UT5 571 aa28.97■■■□□ 2.23
LIMCH1-211ENST00000509638 SLC22A15Q8IZD6 547 aa28.97■■■□□ 2.23
LIMCH1-211ENST00000509638 SFRP1Q8N474 314 aa28.97■■■□□ 2.23
LIMCH1-211ENST00000509638 TSR3Q9UJK0 312 aaKnown RBP28.97■■■□□ 2.23
LIMCH1-211ENST00000509638 CDV3Q9UKY7 258 aaKnown RBP28.97■■■□□ 2.23
LIMCH1-211ENST00000509638 SLC39A10Q9ULF5 831 aa28.97■■■□□ 2.23
LIMCH1-211ENST00000509638 DHRS7Q9Y394 339 aa28.97■■■□□ 2.23
LIMCH1-211ENST00000509638 TRBV23OR9-2A0A075B6M9 112 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 LY6G6EA0A0G2JKS1 128 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 KIR2DS5A0A0G2JLQ3 304 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 A0A0G2JNG1 304 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 KIR2DS3K7RE56 304 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 CBFA2T3O75081 653 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 PDAP1Q13442 181 aaKnown RBP28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 BMPR2Q13873 1038 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 KIR2DS5Q14953 304 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 UGT3A1Q6NUS8 523 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 BAHD1Q8TBE0 780 aaPredicted RBP28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 DCAKDQ8WVC6 231 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 CNDP2Q96KP4 475 aaKnown RBP28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 CAB39LQ9H9S4 337 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 IMP3Q9NV31 184 aaKnown RBP28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 CFAP20Q9Y6A4 193 aaKnown RBP28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 U3KQA8 63 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 SLCO2B1O94956 709 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 CD9P21926 228 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 TAS2R39P59534 338 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 GBX1Q14549 363 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 CPNE9Q8IYJ1 553 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 MAPK15Q8TD08 544 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 C12orf66Q96MD2 445 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 DHRS4Q9BTZ2 278 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 KLHL42Q9P2K6 505 aa28.96■■■□□ 2.23
LIMCH1-211ENST00000509638 OR5K4A6NMS3 321 aa28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 IFRD1O00458 451 aaPredicted RBP28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 GCAP28676 217 aa28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 SKIV2L2P42285 1042 aaKnown RBP28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 SLC12A2P55011 1212 aa28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 POU4F1Q01851 419 aa28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 ZNF460Q14592 562 aa28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 NR0B2Q15466 257 aa28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 ACSBG2Q5FVE4 666 aa28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 DUS1LQ6P1R4 473 aaKnown RBP28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 C17orf82Q86X59 251 aaPredicted RBP28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 INPP5DQ92835 1189 aa28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 CCDC77Q9BR77 488 aa28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 NCKIPSDQ9NZQ3 722 aa28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 FETUBQ9UGM5 382 aa28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 ZNF180Q9UJW8 692 aa28.95■■■□□ 2.22
LIMCH1-211ENST00000509638 ATP5DP30049 168 aa28.94■■■□□ 2.22
LIMCH1-211ENST00000509638 DAB2P98082 770 aa28.94■■■□□ 2.22
LIMCH1-211ENST00000509638 USP10Q14694 798 aaKnown RBP28.94■■■□□ 2.22
LIMCH1-211ENST00000509638 RPE65Q16518 533 aa28.94■■■□□ 2.22
LIMCH1-211ENST00000509638 MROH9Q5TGP6 573 aa28.94■■■□□ 2.22
LIMCH1-211ENST00000509638 CAPRIN2Q6IMN6 1127 aaKnown RBP28.94■■■□□ 2.22
LIMCH1-211ENST00000509638 TAOK1Q7L7X3 1001 aa28.94■■■□□ 2.22
LIMCH1-211ENST00000509638 CEP97Q8IW35 865 aa28.94■■■□□ 2.22
LIMCH1-211ENST00000509638 TRIM48Q8IWZ4 208 aa28.94■■■□□ 2.22
LIMCH1-211ENST00000509638 ARL14Q8N4G2 192 aa28.94■■■□□ 2.22
LIMCH1-211ENST00000509638 SKA2Q8WVK7 121 aaPredicted RBP28.94■■■□□ 2.22
LIMCH1-211ENST00000509638 INSM2Q96T92 566 aaPredicted RBP28.94■■■□□ 2.22
LIMCH1-211ENST00000509638 ZNF624Q9P2J8 865 aaPredicted RBP28.94■■■□□ 2.22
LIMCH1-211ENST00000509638 HMX2A2RU54 273 aa28.93■■■□□ 2.22
LIMCH1-211ENST00000509638 SLC30A4O14863 429 aa28.93■■■□□ 2.22
LIMCH1-211ENST00000509638 LDOC1O95751 146 aaPredicted RBP28.93■■■□□ 2.22
LIMCH1-211ENST00000509638 NUDT17P0C025 328 aa28.93■■■□□ 2.22
LIMCH1-211ENST00000509638 MTHFD1P11586 935 aaKnown RBP28.93■■■□□ 2.22
LIMCH1-211ENST00000509638 RPIAP49247 311 aa28.93■■■□□ 2.22
LIMCH1-211ENST00000509638 PAQR3Q6TCH7 311 aa28.93■■■□□ 2.22
LIMCH1-211ENST00000509638 CXorf40BQ96DE9 158 aa28.93■■■□□ 2.22
LIMCH1-211ENST00000509638 TSPAN17Q96FV3 270 aa28.93■■■□□ 2.22
LIMCH1-211ENST00000509638 CPNE7Q9UBL6 633 aa28.93■■■□□ 2.22
LIMCH1-211ENST00000509638 RUVBL2Q9Y230 463 aaKnown RBP28.93■■■□□ 2.22
LIMCH1-211ENST00000509638 CNOT1A5YKK6 2376 aaKnown RBP28.93■■■□□ 2.22
LIMCH1-211ENST00000509638 CKMT1AP12532 417 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 SERPINB9P50453 376 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 UBE2IP63279 158 aaKnown RBP28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 DEFB124Q8NES8 71 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 OR2W6PQ8NHA6 318 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 PSMC3IPQ9P2W1 217 aaPredicted RBP28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 SLC24A2Q9UI40 661 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 PADI4Q9UM07 663 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 PCNX2A6NKB5 2137 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 RP1P56715 2156 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 ACADLP28330 430 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 SLC19A1P41440 591 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 FASLGP48023 281 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 HHEXQ03014 270 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 BIRC2Q13490 618 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 ZKSCAN8Q15776 578 aaPredicted RBP28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 GUSBP11Q6P575 273 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 CMC1Q7Z7K0 106 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 SLC9B2Q86UD5 537 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 CDC6Q99741 560 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 STN1Q9H668 368 aaKnown RBP28.92■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms