RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 C1QTNF3-AMACRE9PGA6 284 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 NDUFS3O75489 264 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 GOT2P00505 430 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 CAPN1P07384 714 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 XRCC1P18887 633 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 LPOP22079 712 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 EPHA3P29320 983 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 NTSR1P30989 418 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 FMO4P31512 558 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 TRPC1P48995 793 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 CNTN1Q12860 1018 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 HNRNPA1L2Q32P51 320 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 DENND5AQ6IQ26 1287 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 NEPROQ6NW34 567 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 PARS2Q7L3T8 475 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 FAM160A2Q8N612 972 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 CLDN19Q8N6F1 224 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 FRMD1Q8N878 549 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 FEM1CQ96JP0 617 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 SCYL1Q96KG9 808 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 DMRTB1Q96MA1 342 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 PKP2Q99959 881 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 NOL11Q9H8H0 719 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 PRSS16Q9NQE7 514 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 MARK1Q9P0L2 795 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 MYRFQ9Y2G1 1151 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 ANKRD36A6QL64 1941 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 EDDM13A0A1B0GTR0 161 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 AXIN1O15169 862 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 SERPINB7O75635 380 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 TRIM16O95361 564 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 PAK4O96013 591 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 PDGFBP01127 241 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 PRLP01236 227 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 PRNPP04156 253 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 ATXN1LP0C7T5 689 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 CD1EP15812 388 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 TSTA3Q13630 321 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 LRP8Q14114 963 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 UBE2UQ5VVX9 321 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 TMEM198Q66K66 360 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 KCTD11Q693B1 232 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 FSTL4Q6MZW2 842 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 ERAP2Q6P179 960 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 DSG4Q86SJ6 1040 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 ACTRT2Q8TDY3 377 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 OMA1Q96E52 524 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 MRPS26Q9BYN8 205 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 ING2Q9H160 280 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 ABCB10Q9NRK6 738 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 C2orf42Q9NWW7 574 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 OBP2AQ9NY56 170 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 MARCH4Q9P2E8 410 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 FADS3Q9Y5Q0 445 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 CHD5Q8TDI0 1954 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 EP300Q09472 2414 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 SH3PXD2BA1X283 911 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 IQCF5A8MTL0 148 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 GFRA2O00451 464 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 ZNF821O75541 412 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 TIPRLO75663 272 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 MYO1DO94832 1006 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 IFI30P13284 250 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 CHRM3P20309 590 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 JAK1P23458 1154 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 GRK2P25098 689 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 TYK2P29597 1187 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 PLIN5Q00G26 463 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 ZNF33AQ06730 810 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 DMC1Q14565 340 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 ELAVL3Q14576 367 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 USP10Q14694 798 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 KLHL38Q2WGJ6 581 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 ZNF789Q5FWF6 425 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 TMEM196Q5HYL7 178 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 SPDYCQ5MJ68 293 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 TSTD2Q5T7W7 516 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 RAET1GQ6H3X3 334 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 TSSK4Q6SA08 328 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 ZNF852Q6ZMS4 543 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 FBXW8Q8N3Y1 598 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 IL17RCQ8NAC3 791 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 DENND1AQ8TEH3 1009 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 SKA1Q96BD8 255 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 MAELQ96JY0 434 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 COQ10BQ9H8M1 238 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 TRPV4Q9HBA0 871 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 SERGEFQ9UGK8 458 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 CYP8B1Q9UNU6 501 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 CA5BQ9Y2D0 317 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 PRKAB1Q9Y478 270 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 NOX1Q9Y5S8 564 aa8.55□□□□□ -1.04
LIMCH1-209ENST00000509277 GPR179Q6PRD1 2367 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 TICRRQ7Z2Z1 1910 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 PTGES3LE9PB15 166 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 K7EQS6 105 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 PRAMEF1O95521 474 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 PCCBP05166 539 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 SMIM18P0DKX4 95 aa8.54□□□□□ -1.04
LIMCH1-209ENST00000509277 SRFP11831 508 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms