RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 PPP1CAP62136 330 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 RPS18P62269 152 aaKnown RBP20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 GSTM4Q03013 218 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 SARM1Q6SZW1 724 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 SPOCD1Q6ZMY3 1216 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 CNGA4Q8IV77 575 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 CFAP206Q8IYR0 622 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 DSELQ8IZU8 1212 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 MRGPRX2Q96LB1 330 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 INSM2Q96T92 566 aaPredicted RBP20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 CHST8Q9H2A9 424 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 NHEJ1Q9H9Q4 299 aaPredicted RBP20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 MLXIPLQ9NP71 852 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 ABHD10Q9NUJ1 306 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 FAM8A1Q9UBU6 413 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 GPN3Q9UHW5 284 aaPredicted RBP20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 FEZ2Q9UHY8 353 aaPredicted RBP20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 POMT2Q9UKY4 750 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 TCFL5Q9UL49 500 aa20.48■□□□□ 0.87
SQSTM1-210ENST00000506042 C17orf113A0A1B0GUU1 675 aa20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 E7EQ34 232 aa20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 F8W8V4 182 aa20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 SRP72O76094 671 aaKnown RBP20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 IPO13O94829 963 aaKnown RBP20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 POLR2CP19387 275 aaPredicted RBP20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 COMTP21964 271 aa20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 PTGIRP43119 386 aa20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 WASHC5Q12768 1159 aa20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 GPS2Q13227 327 aa20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 ELOAQ14241 798 aaKnown RBP20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 ASTE1Q2TB18 679 aaPredicted RBP20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 ZNF517Q6ZMY9 492 aaPredicted RBP20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 FAM83HQ6ZRV2 1179 aaPredicted RBP20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 ZNF567Q8N184 647 aa20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 ENDOVQ8N8Q3 282 aaKnown RBP20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 OR4E2Q8NGC2 313 aa20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 FER1L6-AS2Q96M78 137 aa20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 QKIQ96PU8 341 aaKnown RBP eCLIP20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 COPS8Q99627 209 aa20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 TLR10Q9BXR5 811 aa20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 C5AR2Q9P296 337 aa20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 MAP4K5Q9Y4K4 846 aa20.47■□□□□ 0.87
SQSTM1-210ENST00000506042 C2orf74A8MZ97 194 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 TMEM150CB9EJG8 249 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 H7C0C1 242 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 PEX12O00623 359 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 POLBP06746 335 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 CD68P34810 354 aaPredicted RBP20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 CHRNA4P43681 627 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 ATP5OP48047 213 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 ITGA1P56199 1179 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 IL10RAQ13651 578 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 CPZQ66K79 652 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 SYTL1Q8IYJ3 562 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 CLEC1AQ8NC01 280 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 PNPLA2Q96AD5 504 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 FERD3LQ96RJ6 166 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 GBA3Q9H227 469 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 MVB12BQ9H7P6 319 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 AP1M2Q9Y6Q5 423 aa20.46■□□□□ 0.87
SQSTM1-210ENST00000506042 SLC9B1P1A6NJY1 282 aa20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 QSOX1O00391 747 aa20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 CD151P48509 253 aa20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 KPNA2P52292 529 aaKnown RBP20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 CHAF1BQ13112 559 aa20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 RPA4Q13156 261 aa20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 TCEAL1Q15170 157 aa20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 INPP5JQ15735 1006 aaPredicted RBP20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 GPR33Q49SQ1 333 aa20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 NADK2Q4G0N4 442 aa20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 LYPLAL1Q5VWZ2 237 aa20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 JMJD6Q6NYC1 403 aaPredicted RBP20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 B4GALNT4Q76KP1 1039 aa20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 CDKL3Q8IVW4 592 aaPredicted RBP20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 IQCKQ8N0W5 287 aa20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 OR4K2Q8NGD2 314 aa20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 CALR3Q96L12 384 aaKnown RBP20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 ALS2CR12Q96Q35 445 aa20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 FICDQ9BVA6 458 aa20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 SAE1Q9UBE0 346 aaPredicted RBP20.45■□□□□ 0.86
SQSTM1-210ENST00000506042 APOC4-APOC2K7ER74 178 aa20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 BUD23O43709 281 aaKnown RBP20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 CEACAM4O75871 244 aa20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 SORBS2O94875 1100 aaKnown RBP20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 APOC2P02655 101 aa20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 ATP1B2P14415 290 aaPredicted RBP20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 PECAM1P16284 738 aaPredicted RBP20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 PRLHRP49683 370 aa20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 NOMO1Q15155 1222 aa20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 KYNUQ16719 465 aa20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 VWA5B1Q5TIE3 1220 aa20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 SNX20Q7Z614 316 aa20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 DAAM2Q86T65 1068 aa20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 KATNAL2Q8IYT4 538 aa20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 OXNAD1Q96HP4 312 aaPredicted RBP20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 SPTLC3Q9NUV7 552 aa20.44■□□□□ 0.86
SQSTM1-210ENST00000506042 LRRK2Q5S007 2527 aa20.43■□□□□ 0.86
SQSTM1-210ENST00000506042 MACROD2A1Z1Q3 448 aa20.43■□□□□ 0.86
SQSTM1-210ENST00000506042 CCDC66A2RUB6 948 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms