RNA–Protein interactions for RNA: ENST00000505804.1

TOPBP1-204, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 472 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-204ENST00000505804 NOTCH4Q99466 2003 aa3.8□□□□□ -1.8
TOPBP1-204ENST00000505804 WDR81Q562E7 1941 aa3.8□□□□□ -1.8
TOPBP1-204ENST00000505804 PRR23D1E9PI22 279 aaPredicted RBP3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 H1F0P07305 194 aaKnown RBP3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 PRR23D2P0DMB1 279 aaPredicted RBP3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 MSH3P20585 1137 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 KRT20P35900 424 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 LINC01547P58512 204 aaPredicted RBP3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 SNAPC1Q16533 368 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 NAA16Q6N069 864 aaPredicted RBP3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 CUZD1Q86UP6 607 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 TMEM173Q86WV6 379 aaPredicted RBP3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 OR8H2Q8N162 312 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 LSMEM1Q8N8F7 131 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 MTERF3Q96E29 417 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 SCRN2Q96FV2 425 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 DGAT2Q96PD7 388 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 ABHD6Q9BV23 337 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 FNDC11Q9BVV2 318 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 CCDC106Q9BWC9 280 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 MOV10L1Q9BXT6 1211 aaKnown RBP3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 MMP28Q9H239 520 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 OSER1Q9NX31 292 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 HAO2Q9NYQ3 351 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 CLIC5Q9NZA1 410 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 TRPV2Q9Y5S1 764 aa3.79□□□□□ -1.8
TOPBP1-204ENST00000505804 FAM172BPA6NC97 362 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 IPO8O15397 1037 aaKnown RBP3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 ABCB1P08183 1280 aaPredicted RBP3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 IL11P20809 199 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 EPHA2P29317 976 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 THOP1P52888 689 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 PHEXP78562 749 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 PNRC1Q12796 327 aaPredicted RBP3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 PRPF4BQ13523 1007 aaKnown RBP3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 TMEM266Q2M3C6 531 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 CBWD6Q4V339 395 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 CBWD3Q5JTY5 395 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 GRTP1Q5TC63 336 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 C6orf163Q5TEZ5 329 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 MEX3BQ6ZN04 569 aaKnown RBP3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 MARK2Q7KZI7 788 aaKnown RBP3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 TRMT1LQ7Z2T5 733 aaKnown RBP3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 FAM114A1Q8IWE2 563 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 AFAP1Q8N556 730 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 POMGNT2Q8NAT1 580 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 POGLUT1Q8NBL1 392 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 KCTD6Q8NC69 237 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 OR10S1Q8NGN2 331 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 OR5M8Q8NGP6 311 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 CFAP61Q8NHU2 1237 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 ZNF473Q8WTR7 871 aaKnown RBP3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 DNASE2BQ8WZ79 361 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 SPACA9Q96E40 222 aaPredicted RBP3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 STAMBPL1Q96FJ0 436 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 ZNF354BQ96LW1 612 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 PSD2Q9BQI7 771 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 DPAGT1Q9H3H5 408 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 OPA3Q9H6K4 179 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 TBC1D17Q9HA65 648 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 ZBTB20Q9HC78 741 aaPredicted RBP3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 ZNF334Q9HCZ1 680 aaPredicted RBP3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 ACKR4Q9NPB9 350 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 FAM118AQ9NWS6 357 aa3.78□□□□□ -1.8
TOPBP1-204ENST00000505804 CNTNAP2Q9UHC6 1331 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 A0A0B4J293 547 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 MED19A0JLT2 244 aaPredicted RBP3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 SYNDIG1LA6NDD5 238 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 ANKUB1A6NFN9 424 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 DUXAA6NLW8 204 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 PRKNO60260 465 aaPredicted RBP3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 TSPAN1O60635 241 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 MED24O75448 989 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 SLC22A3O75751 556 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 PSMD10O75832 226 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 TOMM70O94826 608 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 CSPG5O95196 566 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 DNTTP04053 509 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 NR3C1P04150 777 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 UMODP07911 640 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 PFKFB1P16118 471 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 DCTP40126 519 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 TPD52P55327 224 aaPredicted RBP3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 RPS18P62269 152 aaKnown RBP3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 CALD1Q05682 793 aaKnown RBP3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 AIMP1Q12904 312 aaKnown RBP3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 DMP1Q13316 513 aaPredicted RBP3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 MFAP5Q13361 173 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 IL11RAQ14626 422 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 NR1D2Q14995 579 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 MDH1BQ5I0G3 518 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 CCNYL2Q5T2Q4 361 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 RNASEH2BQ5TBB1 312 aaKnown RBP3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 SLC27A1Q6PCB7 646 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 DCUN1D3Q8IWE4 304 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 GPALPP1Q8IXQ4 340 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 ZNF595Q8IYB9 648 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 PAPD5Q8NDF8 572 aaKnown RBP3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 KLHDC9Q8NEP7 349 aa3.77□□□□□ -1.81
TOPBP1-204ENST00000505804 MOSPD2Q8NHP6 518 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms