RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CA8P35219 290 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 WDR5P61964 334 aaKnown RBP11.77□□□□□ -0.53
NUP54-202ENST00000502850 ZXDBP98169 803 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 ROR2Q01974 943 aaKnown RBP11.77□□□□□ -0.53
NUP54-202ENST00000502850 SP140Q13342 867 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 CAPRIN1Q14444 709 aaKnown RBP11.77□□□□□ -0.53
NUP54-202ENST00000502850 MYLK3Q32MK0 819 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 FBXO48Q5FWF7 155 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 TMTC4Q5T4D3 741 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 C6orf52Q5T4I8 152 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 CACHD1Q5VU97 1274 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 FOXB2Q5VYV0 432 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 KRT80Q6KB66 452 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 CYP20A1Q6UW02 462 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 Q6ZSR9 355 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 FKBP9P1Q75LS8 142 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 GAREM2Q75VX8 874 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 LRRC70Q7Z2Q7 622 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 GALNT15Q8N3T1 639 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 SFRP1Q8N474 314 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 OR8J3Q8NGG0 315 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 OR6K2Q8NGY2 324 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 CANT1Q8WVQ1 401 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 CENPNQ96H22 339 aaPredicted RBP11.77□□□□□ -0.53
NUP54-202ENST00000502850 ACOX2Q99424 681 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 SH3GL1Q99961 368 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 TRIM4Q9C037 500 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 SUV39H2Q9H5I1 410 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 NSUN3Q9H649 340 aaKnown RBP11.77□□□□□ -0.53
NUP54-202ENST00000502850 AGPAT4Q9NRZ5 378 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 PNPLA3Q9NST1 481 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 ANAPC2Q9UJX6 822 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 AURKCQ9UQB9 309 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 SCAMP3O14828 347 aaKnown RBP11.76□□□□□ -0.53
NUP54-202ENST00000502850 TULP3O75386 442 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 TIPRLO75663 272 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 CSPG5O95196 566 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 POP4O95707 220 aaKnown RBP11.76□□□□□ -0.53
NUP54-202ENST00000502850 KRT6AP02538 564 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 KRT6BP04259 564 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 SMIM18P0DKX4 95 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 CSF2RAP15509 400 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 VARSP26640 1264 aaKnown RBP11.76□□□□□ -0.53
NUP54-202ENST00000502850 CALRP27797 417 aaKnown RBP11.76□□□□□ -0.53
NUP54-202ENST00000502850 AKT1P31749 480 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 ZFP36L2P47974 494 aaKnown RBP11.76□□□□□ -0.53
NUP54-202ENST00000502850 KRT6CP48668 564 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 HSPA7P48741 367 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 DEFB103AP81534 67 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 IMPG1Q17R60 797 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 AP5B1Q2VPB7 878 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 EML3Q32P44 896 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 FAM117BQ6P1L5 589 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 CARM1Q86X55 608 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 PLPP6Q8IY26 295 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 ADGRG5Q8IZF4 528 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 PAPD5Q8NDF8 572 aaKnown RBP11.76□□□□□ -0.53
NUP54-202ENST00000502850 PHC3Q8NDX5 983 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 TRPV3Q8NET8 790 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 PROKR1Q8TCW9 393 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 AUTS2Q8WXX7 1259 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 NCSTNQ92542 709 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 BHMTQ93088 406 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 VPS33AQ96AX1 596 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 RHBDF1Q96CC6 855 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 BOCQ9BWV1 1114 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 APOL5Q9BWW9 433 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 ANKRD60Q9BZ19 345 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 SEMA6AQ9H2E6 1030 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 UBAP1Q9NZ09 502 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 PKD2L2Q9NZM6 624 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 HECAQ9UBI9 543 aaPredicted RBP11.76□□□□□ -0.53
NUP54-202ENST00000502850 LZTS1Q9Y250 596 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 ASB1Q9Y576 335 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 PCDHB3Q9Y5E6 796 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 PLXNB3Q9ULL4 1909 aa11.76□□□□□ -0.53
NUP54-202ENST00000502850 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.75□□□□□ -0.53
NUP54-202ENST00000502850 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.75□□□□□ -0.53
NUP54-202ENST00000502850 ARHGAP10A1A4S6 786 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 ASPDHA6ND91 283 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 NPIPB15A6NHN6 443 aaPredicted RBP11.75□□□□□ -0.53
NUP54-202ENST00000502850 CFAP99D6REC4 459 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 QSOX1O00391 747 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 SLC16A5O15375 505 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 GPR39O43194 453 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 ULK1O75385 1050 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 ZNF821O75541 412 aaPredicted RBP11.75□□□□□ -0.53
NUP54-202ENST00000502850 STK16O75716 305 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 FGF18O76093 207 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 KCNH1O95259 989 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 CNPP09543 421 aaKnown RBP11.75□□□□□ -0.53
NUP54-202ENST00000502850 MPC1LP0DKB6 136 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 CYP2A6P11509 494 aaPredicted RBP11.75□□□□□ -0.53
NUP54-202ENST00000502850 ZNF30P17039 623 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 ITGB6P18564 788 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 CASP2P42575 452 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 RECQLP46063 649 aaPredicted RBP11.75□□□□□ -0.53
NUP54-202ENST00000502850 HNMTP50135 292 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 NR1H2P55055 460 aa11.75□□□□□ -0.53
NUP54-202ENST00000502850 PWP1Q13610 501 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms