RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 HAUS4Q9H6D7 363 aa13.82□□□□□ -0.2
PRPF40A-211ENST00000493468 ATP13A2Q9NQ11 1180 aa13.82□□□□□ -0.2
PRPF40A-211ENST00000493468 FANCLQ9NW38 375 aa13.82□□□□□ -0.2
PRPF40A-211ENST00000493468 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.82□□□□□ -0.26e-8■■■□□ 14.7
PRPF40A-211ENST00000493468 MYO1AQ9UBC5 1043 aa13.82□□□□□ -0.2
PRPF40A-211ENST00000493468 IP6K2Q9UHH9 426 aa13.82□□□□□ -0.2
PRPF40A-211ENST00000493468 ACSL5Q9ULC5 683 aa13.82□□□□□ -0.2
PRPF40A-211ENST00000493468 CSAG2Q9Y5P2 127 aa13.82□□□□□ -0.2
PRPF40A-211ENST00000493468 CFAP20Q9Y6A4 193 aaKnown RBP13.82□□□□□ -0.2
PRPF40A-211ENST00000493468 DDX3XO00571 662 aaKnown RBP eCLIP13.81□□□□□ -0.22e-15■□□□□ 11.1
PRPF40A-211ENST00000493468 MAP3K7O43318 606 aa13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 POLR2CP19387 275 aaPredicted RBP13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 ARCN1P48444 511 aaKnown RBP13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 GBE1Q04446 702 aa13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 PPIDQ08752 370 aaKnown RBP13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 ZBTB17Q13105 803 aa13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 DUS1LQ6P1R4 473 aaKnown RBP13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 B4GALNT4Q76KP1 1039 aa13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 PPP1R32Q7Z5V6 425 aa13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 FJX1Q86VR8 437 aa13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 PROKR1Q8TCW9 393 aa13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 WWP1Q9H0M0 922 aa13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 NUP62CLQ9H1M0 184 aa13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 CBX8Q9HC52 389 aa13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 CHST11Q9NPF2 352 aa13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 IL26Q9NPH9 171 aa13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 SMOXQ9NWM0 555 aa13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 GPN3Q9UHW5 284 aaPredicted RBP13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 PTRH2Q9Y3E5 179 aaKnown RBP13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 AP1M2Q9Y6Q5 423 aa13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 COLEC10Q9Y6Z7 277 aa13.81□□□□□ -0.2
PRPF40A-211ENST00000493468 MGAT4DA6NG13 374 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 LRRC53A6NM62 1247 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 AGPSO00116 658 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 KCNK1O00180 336 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 AURKAO14965 403 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 DDX3YO15523 660 aaKnown RBP13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 NDST3O95803 873 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 SLC35G4P0C7Q5 338 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 PYGMP11217 842 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 ST6GAL1P15907 406 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 PRDX3P30048 256 aaKnown RBP13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 OTUD4Q01804 1114 aaKnown RBP13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 ZNF169Q14929 603 aaPredicted RBP13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 PDK2Q15119 407 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 TESK1Q15569 626 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 ASIC2Q16515 512 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 CYP2A13Q16696 494 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 HADHQ16836 314 aaKnown RBP13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 RHBDD2Q6NTF9 364 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 TMEM220Q6QAJ8 160 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 BNC2Q6ZN30 1099 aaPredicted RBP13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 APTXQ7Z2E3 356 aaKnown RBP13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 NT5DC3Q86UY8 548 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 GPR135Q8IZ08 494 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 CCNYQ8ND76 341 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 ACVR1CQ8NER5 493 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 LRRN4Q8WUT4 740 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 ITLN2Q8WWU7 325 aaPredicted RBP13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 PTERQ96BW5 349 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 ZNF830Q96NB3 372 aaPredicted RBP13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 GBP5Q96PP8 586 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 SLC25A51Q9H1U9 297 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 TRABDQ9H4I3 376 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 AIPL1Q9NZN9 384 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 SPO11Q9Y5K1 396 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 HEBP2Q9Y5Z4 205 aa13.8□□□□□ -0.2
PRPF40A-211ENST00000493468 OR2AG2A6NM03 316 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 H3BMH7 237 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 SPAM1P38567 509 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 LMAN1P49257 510 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 SLC10A2Q12908 348 aaPredicted RBP13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 CDC16Q13042 620 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 ITGA9Q13797 1035 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 TLR1Q15399 786 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 HIF1AQ16665 826 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 LONRF2Q1L5Z9 754 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 MLIPQ5VWP3 458 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 RPUSD3Q6P087 351 aaKnown RBP13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 MRPL14Q6P1L8 145 aaKnown RBP13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 FAM180AQ6UWF9 173 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 SPNS3Q6ZMD2 512 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 NXPE1Q8N323 547 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 PQLC3Q8N755 202 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 OR4E2Q8NGC2 313 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 OR2L2Q8NH16 312 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 DNAJB14Q8TBM8 379 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 TRIM56Q9BRZ2 755 aaKnown RBP13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 AP1M1Q9BXS5 423 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 TRIM8Q9BZR9 551 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 BPIFA1Q9NP55 256 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 NDOR1Q9UHB4 597 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 ANAPC7Q9UJX3 599 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 PCNX1Q96RV3 2341 aa13.79□□□□□ -0.2
PRPF40A-211ENST00000493468 CCDC66A2RUB6 948 aa13.78□□□□□ -0.2
PRPF40A-211ENST00000493468 GSAPA4D1B5 854 aa13.78□□□□□ -0.2
PRPF40A-211ENST00000493468 UMODP07911 640 aa13.78□□□□□ -0.2
PRPF40A-211ENST00000493468 CBSLP0DN79 551 aa13.78□□□□□ -0.2
PRPF40A-211ENST00000493468 PBLDP30039 288 aaPredicted RBP13.78□□□□□ -0.2
PRPF40A-211ENST00000493468 CBSP35520 551 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms