RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 HOPXQ9BPY8 73 aaPredicted RBP10.87□□□□□ -0.67
HDAC6-228ENST00000486227 KIFC1Q9BW19 673 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 SUV39H2Q9H5I1 410 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 DZANK1Q9NVP4 752 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 C3orf18Q9UK00 162 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 N4BP2Q86UW6 1770 aaPredicted RBP10.87□□□□□ -0.67
HDAC6-228ENST00000486227 H0Y858 1186 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 PITPNM1O00562 1244 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 COCHO43405 550 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 PRAMEF11O60813 436 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 CFAP206Q8IYR0 622 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 AMER2Q8N7J2 671 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 ZNF366Q8N895 744 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 AARSD1Q9BTE6 412 aaKnown RBP10.87□□□□□ -0.67
HDAC6-228ENST00000486227 MAP10Q9P2G4 905 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 MAST2Q6P0Q8 1798 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 NRAPQ86VF7 1730 aa10.87□□□□□ -0.67
HDAC6-228ENST00000486227 KIAA0100Q14667 2235 aaKnown RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 PDLIM1O00151 329 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 NADKO95544 446 aaPredicted RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 EPORP19235 508 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 NSG1P42857 185 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 TUBA4AP68366 448 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 GTF2H2Q13888 395 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 DGCR6Q14129 220 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 CBX2Q14781 532 aaPredicted RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 UBAP2Q5T6F2 1119 aaKnown RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 GTF2H2CQ6P1K8 395 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 PAOXQ6QHF9 649 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 TMPRSS11BQ86T26 416 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 ARL10Q8N8L6 244 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 PSMA8Q8TAA3 256 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 BPIFB1Q8TDL5 484 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 IGSF8Q969P0 613 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 COL26A1Q96A83 441 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 ADI1Q9BV57 179 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 NENFQ9UMX5 172 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 BTBD3Q9Y2F9 522 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 PAPPAQ13219 1627 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 UROSP10746 265 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 CENPAP49450 140 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 ECT2LQ008S8 904 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 FGD3Q5JSP0 725 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 CAPN13Q6MZZ7 669 aaPredicted RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 ZCCHC8Q6NZY4 707 aaKnown RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 SPESP1Q6UW49 350 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 GRASPQ7Z6J2 395 aaPredicted RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 MRPL10Q7Z7H8 261 aaKnown RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 ADHFE1Q8IWW8 467 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 GPR135Q8IZ08 494 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 MARVELD2Q8N4S9 558 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 CAMKK1Q8N5S9 505 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 NPWQ8N729 165 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 C3orf58Q8NDZ4 430 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 IRF7Q92985 503 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 C1orf74Q96LT6 269 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 SMG9Q9H0W8 520 aaKnown RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 TDP1Q9NUW8 608 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 SMPD3Q9NY59 655 aaPredicted RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 LINC00854A0A1B0GVQ3 168 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 RFPL1O75677 317 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 VIPP01282 170 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 DGKEP52429 567 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 POLR2JP52435 117 aaKnown RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 CARD16Q5EG05 197 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 RALGPS2Q86X27 583 aaPredicted RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 STX19Q8N4C7 294 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 BPIFB6Q8NFQ5 453 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 TADA1Q96BN2 335 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 FCRL3Q96P31 734 aaPredicted RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 PHF12Q96QT6 1004 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 IL12RB2Q99665 862 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 CHID1Q9BWS9 393 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 SGK2Q9HBY8 427 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 KRCC1Q9NPI7 259 aaPredicted RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 A8MT66 165 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 CLDN9O95484 217 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 HERC3Q15034 1050 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 Q6ZVU0 165 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 BNIPLQ7Z465 357 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 CLDN19Q8N6F1 224 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 TTC9BQ8N6N2 239 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 PHC3Q8NDX5 983 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 OR2AP1Q8NGE2 309 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 OMA1Q96E52 524 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 TFB2MQ9H5Q4 396 aaKnown RBP10.86□□□□□ -0.67
HDAC6-228ENST00000486227 REEP1Q9H902 201 aa10.86□□□□□ -0.67
HDAC6-228ENST00000486227 SNPHO15079 494 aa10.85□□□□□ -0.67
HDAC6-228ENST00000486227 SLC31A1O15431 190 aa10.85□□□□□ -0.67
HDAC6-228ENST00000486227 IFNA16P05015 189 aa10.85□□□□□ -0.67
HDAC6-228ENST00000486227 GNSP15586 552 aa10.85□□□□□ -0.67
HDAC6-228ENST00000486227 XRCC1P18887 633 aaPredicted RBP10.85□□□□□ -0.67
HDAC6-228ENST00000486227 SCAPQ12770 1279 aa10.85□□□□□ -0.67
HDAC6-228ENST00000486227 MBLAC2Q68D91 279 aa10.85□□□□□ -0.67
HDAC6-228ENST00000486227 PDE12Q6L8Q7 609 aaKnown RBP10.85□□□□□ -0.67
HDAC6-228ENST00000486227 TMEM220Q6QAJ8 160 aa10.85□□□□□ -0.67
HDAC6-228ENST00000486227 TIFABQ6ZNK6 161 aa10.85□□□□□ -0.67
HDAC6-228ENST00000486227 NCCRP1Q6ZVX7 275 aaPredicted RBP10.85□□□□□ -0.67
HDAC6-228ENST00000486227 SNX20Q7Z614 316 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms