RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, human

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPHP4-208	ENST00000478423	ADH5	P11766	374 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	PEX2	P28328	305 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	GK	P32189	559 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	SCAP	Q12770	1279 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	TOP3A	Q13472	1001 aa	Predicted RBP	13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	FAM20C	Q8IXL6	584 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	C11orf65	Q8NCR3	313 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	WDR36	Q8NI36	951 aa	Known RBP	13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	AKTIP	Q9H8T0	292 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	TMLHE	Q9NVH6	421 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	NCK1	P16333	377 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	TALDO1	P37837	337 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	MTHFR	P42898	656 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	ERICH5	Q6P6B1	374 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	RPS27L	Q71UM5	84 aa	Known RBP	13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	DEPDC4	Q8N2C3	294 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	CBR4	Q8N4T8	237 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	DPEP2	Q9H4A9	486 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	ELAC1	Q9H777	363 aa	Known RBP	13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	CLK4	Q9HAZ1	481 aa	Known RBP	13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	SEC14L3	Q9UDX4	400 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	RUVBL1	Q9Y265	456 aa	Known RBP	13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	BTAF1	O14981	1849 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	LRRC72	A6NJI9	287 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	OAZ2	O95190	189 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	IL6	P05231	212 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	TSPAN19	P0C672	248 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	BIK	Q13323	160 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	MARCH8	Q5T0T0	291 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	C22orf39	Q6P5X5	142 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	ADAMTS15	Q8TE58	950 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	MAP4K5	Q9Y4K4	846 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	COLEC10	Q9Y6Z7	277 aa		13.99	□□□□□ -0.17
NPHP4-208	ENST00000478423	LCHN	A4D1U4	455 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	PRR23D1	E9PI22	279 aa	Predicted RBP	13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	MED26	O95402	600 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	PRR23D2	P0DMB1	279 aa	Predicted RBP	13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	GDI1	P31150	447 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	MTPN	P58546	118 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	LSM3	P62310	102 aa	Known RBP	13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	CREB5	Q02930	508 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	DPYS	Q14117	519 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	SIM2	Q14190	667 aa	Predicted RBP	13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	PCLAF	Q15004	111 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	RFTN2	Q52LD8	501 aa	Predicted RBP	13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	LRRC66	Q68CR7	880 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	CDHR3	Q6ZTQ4	885 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	CYP2U1	Q7Z449	544 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	NPW	Q8N729	165 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	GLB1L3	Q8NCI6	653 aa	Predicted RBP	13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	BPIFB1	Q8TDL5	484 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	IMP4	Q96G21	291 aa	Known RBP	13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	ZNF778	Q96MU6	729 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	FCRL3	Q96P31	734 aa	Predicted RBP	13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	PCDHAC1	Q9H158	963 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	SMIM31	A0A1B0GVY4	71 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	ZNF840P	A6NDX5	716 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	LEFTY2	O00292	366 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	ALDOA	P04075	364 aa	Known RBP	13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	GPI	P06744	558 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	BMP7	P18075	431 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	FSHR	P23945	695 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	GSTT1	P30711	240 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	GDF5	P43026	501 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	MAPK11	Q15759	364 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	TIMM50	Q3ZCQ8	353 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	AHI1	Q8N157	1196 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	CELF5	Q8N6W0	485 aa	Known RBP	13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	KLHL23	Q8NBE8	558 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	SEMA3G	Q9NS98	782 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	PLA2G16	P53816	162 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	PIK3R6	Q5UE93	754 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	B3GNT6	Q6ZMB0	384 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	PHTF2	Q8N3S3	785 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	SLC43A3	Q8NBI5	491 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	C12orf66	Q96MD2	445 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	MAFK	O60675	156 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	OR6A2	O95222	327 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	UGT2B15	P54855	530 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	ACTR3	P61158	418 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	ARMCX4	Q5H9R4	360 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	MACC1	Q6ZN28	852 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	TAF8	Q7Z7C8	310 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	ZNF598	Q86UK7	904 aa	Known RBP	13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	HID1	Q8IV36	788 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	C2CD4A	Q8NCU7	369 aa	Predicted RBP	13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	OR7A2P	Q8NGA2	310 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	TTLL2	Q9BWV7	592 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	MUC13	Q9H3R2	512 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	EXD2	Q9NVH0	621 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	SIRPG	Q9P1W8	387 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	RAPGEFL1	Q9UHV5	662 aa		13.98	□□□□□ -0.17
NPHP4-208	ENST00000478423	CCNDBP1	O95273	360 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	RFC2	P35250	354 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	GGT5	P36269	586 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	AFF1	P51825	1210 aa	Known RBP	13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	MTAP	Q13126	283 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	SNAP47	Q5SQN1	464 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423	CDC73	Q6P1J9	531 aa		13.97	□□□□□ -0.17
NPHP4-208	ENST00000478423		Q6ZVL8	140 aa		13.97	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms