RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 GFYI3L273 518 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 FPGTO14772 594 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 KMOO15229 486 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 KIAA0754O94854 1291 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 MATN4O95460 622 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 CATP04040 527 aaKnown RBP12.57□□□□□ -0.4
VPS13D-205ENST00000473099 ZNF8P17098 575 aaPredicted RBP12.57□□□□□ -0.4
VPS13D-205ENST00000473099 HNRNPA2B1P22626 353 aaKnown RBP12.57□□□□□ -0.4
VPS13D-205ENST00000473099 EEF1DP29692 281 aaKnown RBP12.57□□□□□ -0.4
VPS13D-205ENST00000473099 AKT2P31751 481 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 IGFALSP35858 605 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 MAGEA9P43362 315 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 RPS9P46781 194 aaKnown RBP12.57□□□□□ -0.4
VPS13D-205ENST00000473099 PIK3CGP48736 1102 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 KIAA1024LP59773 190 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 ARHGAP8P85298 464 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 PCBP2Q15366 365 aaKnown RBP eCLIP12.57□□□□□ -0.4
VPS13D-205ENST00000473099 UNC50Q53HI1 259 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 ZNF648Q5T619 568 aaPredicted RBP12.57□□□□□ -0.4
VPS13D-205ENST00000473099 C6orf89Q6UWU4 347 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 UBE2R2Q712K3 238 aaPredicted RBP12.57□□□□□ -0.4
VPS13D-205ENST00000473099 TRIM74Q86UV6 250 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 FAM124AQ86V42 546 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 RASGRP3Q8IV61 690 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 SIX5Q8N196 739 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 SPEM1Q8N4L4 309 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 CHCHD4Q8N4Q1 142 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 OXR1Q8N573 874 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 BEND7Q8N7W2 519 aaPredicted RBP12.57□□□□□ -0.4
VPS13D-205ENST00000473099 FAM174AQ8TBP5 190 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 UBTD2Q8WUN7 234 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 SKA2Q8WVK7 121 aaPredicted RBP12.57□□□□□ -0.4
VPS13D-205ENST00000473099 FOXJ1Q92949 421 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 CLDN23Q96B33 292 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 EGFL8Q99944 293 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 APOOQ9BUR5 198 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 TMEM120AQ9BXJ8 343 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 CHRDQ9H2X0 955 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 COG4Q9H9E3 785 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 MBNL1Q9NR56 388 aaKnown RBP12.57□□□□□ -0.4
VPS13D-205ENST00000473099 DNAJC28Q9NX36 388 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 MBD1Q9UIS9 605 aaPredicted RBP12.57□□□□□ -0.4
VPS13D-205ENST00000473099 DCTN4Q9UJW0 460 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 IKZF3Q9UKT9 509 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 DMTF1Q9Y222 760 aa12.57□□□□□ -0.4
VPS13D-205ENST00000473099 ARHGEF17Q96PE2 2063 aaPredicted RBP12.57□□□□□ -0.4
VPS13D-205ENST00000473099 ERICH4A6NGS2 130 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 CCT8L1PA6NM43 557 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 TRPC5OSA6NMA1 111 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 C10orf142B7Z368 130 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 H3BM21 787 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 GIPC1O14908 333 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 HDAC3O15379 428 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 LATO43561 262 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 PSIP1O75475 530 aaKnown RBP12.56□□□□□ -0.4
VPS13D-205ENST00000473099 POP7O75817 140 aaKnown RBP12.56□□□□□ -0.4
VPS13D-205ENST00000473099 APBB3O95704 486 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 CHRNGP07510 517 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 KITP10721 976 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 MAP4P27816 1152 aaKnown RBP12.56□□□□□ -0.4
VPS13D-205ENST00000473099 ACSL1P33121 698 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 RPIAP49247 311 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 HK3P52790 923 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 AQP5P55064 265 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 YPEL5P62699 121 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 PPP2CBP62714 309 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 PPP2CAP67775 309 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 LCP2Q13094 533 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 FZD5Q13467 585 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 ZNF658BQ4V348 819 aaPredicted RBP12.56□□□□□ -0.4
VPS13D-205ENST00000473099 SPDYAQ5MJ70 313 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 TRPM8Q7Z2W7 1104 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 EFL1Q7Z2Z2 1120 aaKnown RBP12.56□□□□□ -0.4
VPS13D-205ENST00000473099 YTHDF3Q7Z739 585 aaKnown RBP12.56□□□□□ -0.4
VPS13D-205ENST00000473099 AMZ2Q86W34 360 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 LSMEM2Q8N112 164 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 CAMKK1Q8N5S9 505 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 ZNF781Q8N8C0 355 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 FBXO15Q8NCQ5 510 aaPredicted RBP12.56□□□□□ -0.4
VPS13D-205ENST00000473099 FLCNQ8NFG4 579 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 PJA1Q8NG27 643 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 OR56A4Q8NGH8 313 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 RFWD2Q8NHY2 731 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 ZNF483Q8TF39 744 aaPredicted RBP12.56□□□□□ -0.4
VPS13D-205ENST00000473099 NAT14Q8WUY8 206 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 ATL1Q8WXF7 558 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 KLK6Q92876 244 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 LRRC37BQ96QE4 947 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 TIMM29Q9BSF4 260 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 PCED1AQ9H1Q7 454 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 ZNF395Q9H8N7 513 aaPredicted RBP12.56□□□□□ -0.4
VPS13D-205ENST00000473099 TBC1D17Q9HA65 648 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 PFDN4Q9NQP4 134 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 WWOXQ9NZC7 414 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 MARCOQ9UEW3 520 aaPredicted RBP12.56□□□□□ -0.4
VPS13D-205ENST00000473099 EBF1Q9UH73 591 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 PTBP2Q9UKA9 531 aaKnown RBP12.56□□□□□ -0.4
VPS13D-205ENST00000473099 SLC17A4Q9Y2C5 497 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 HS3ST3A1Q9Y663 406 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 TDRD6O60522 2096 aaKnown RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms