RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SGO1Q5FBB7 561 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 RFLNAQ6ZTI6 216 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 FAM217AQ8IXS0 508 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 FIBCD1Q8N539 461 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 DPP10Q8N608 796 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 TRIML2Q8N7C3 387 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 MFSD2AQ8NA29 543 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 ACDQ96AP0 544 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 VOPP1Q96AW1 172 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 TMIGD2Q96BF3 282 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 RHBDF1Q96CC6 855 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 RMND5BQ96G75 393 aaPredicted RBP8.79□□□□□ -1
SYNE1-217ENST00000466159 MPP4Q96JB8 637 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 HERC2P3Q9BVR0 1158 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 LRRC3Q9BY71 257 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 MUC13Q9H3R2 512 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 ATP13A3Q9H7F0 1226 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 WWOXQ9NZC7 414 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 ANAPC2Q9UJX6 822 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 ANGPTL3Q9Y5C1 460 aa8.79□□□□□ -1
SYNE1-217ENST00000466159 ANKRD33BA6NCL7 494 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 EI24O14681 340 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 HTR1EP28566 365 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 CA8P35219 290 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 RFC2P35250 354 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 SPAM1P38567 509 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 DEFB103AP81534 67 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 MERTKQ12866 999 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 PLEKHG6Q3KR16 790 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 TRIM60Q495X7 471 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 GLYATQ6IB77 296 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 REM2Q8IYK8 340 aaPredicted RBP8.78□□□□□ -1
SYNE1-217ENST00000466159 NXPE1Q8N323 547 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 PACRGLQ8N7B6 248 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 C9orf16Q9BUW7 83 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 ADI1Q9BV57 179 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 CD244Q9BZW8 370 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 SMG9Q9H0W8 520 aaKnown RBP8.78□□□□□ -1
SYNE1-217ENST00000466159 GPBP1L1Q9HC44 474 aaPredicted RBP8.78□□□□□ -1
SYNE1-217ENST00000466159 LATS2Q9NRM7 1088 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 OPTCQ9UBM4 332 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 KLQ9UEF7 1012 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 LSM7Q9UK45 103 aaKnown RBP8.78□□□□□ -1
SYNE1-217ENST00000466159 SH3BP1Q9Y3L3 701 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 TRIM17Q9Y577 477 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 ZNF106Q9H2Y7 1883 aaKnown RBP8.78□□□□□ -1
SYNE1-217ENST00000466159 LOC730098B7Z3J9 87 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 ARNTLO00327 626 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 SOCS5O75159 536 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 SEC24DO94855 1032 aaPredicted RBP8.78□□□□□ -1
SYNE1-217ENST00000466159 IGSF6O95976 241 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 NPPAP01160 153 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 VARSP26640 1264 aaKnown RBP8.78□□□□□ -1
SYNE1-217ENST00000466159 GGT5P36269 586 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 ARHGEF7Q14155 803 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 KIAA0040Q15053 153 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 AASDHQ4L235 1098 aaPredicted RBP8.78□□□□□ -1
SYNE1-217ENST00000466159 CRTC1Q6UUV9 634 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 SLC39A5Q6ZMH5 540 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 MACC1Q6ZN28 852 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 ANKRD33Q7Z3H0 272 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 SPRED1Q7Z699 444 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 CMTM8Q8IZV2 173 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 DTWD1Q8N5C7 304 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 PAPD5Q8NDF8 572 aaKnown RBP8.78□□□□□ -1
SYNE1-217ENST00000466159 OR2AP1Q8NGE2 309 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 RNF217Q8TC41 542 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 ZNF689Q96CS4 500 aaPredicted RBP8.78□□□□□ -1
SYNE1-217ENST00000466159 MTFMTQ96DP5 389 aaKnown RBP8.78□□□□□ -1
SYNE1-217ENST00000466159 RNF145Q96MT1 663 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 CGREF1Q99674 301 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 HTATIP2Q9BUP3 242 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 ZFP14Q9HCL3 533 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 ABCB8Q9NUT2 735 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 VAPAQ9P0L0 249 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 KIAA1522Q9P206 1035 aaPredicted RBP8.78□□□□□ -1
SYNE1-217ENST00000466159 ZNHIT2Q9UHR6 403 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 DMTF1Q9Y222 760 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 NEUROG3Q9Y4Z2 214 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 CEPT1Q9Y6K0 416 aa8.78□□□□□ -1
SYNE1-217ENST00000466159 PRRC2BQ5JSZ5 2229 aaKnown RBP8.78□□□□□ -1
SYNE1-217ENST00000466159 DENND4CQ5VZ89 1909 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 A0A1B0GVG6 124 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 DFNA5O60443 496 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 FKTNO75072 461 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 RASAL1O95294 804 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 UMPSP11172 480 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 FCGR1AP12314 374 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 ZNF23P17027 643 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 JAK1P23458 1154 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 SERPINA4P29622 427 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 CSNK1DP48730 415 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 FXNQ16595 210 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 MPPE1Q53F39 396 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 LRRC73Q5JTD7 316 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 TMTC4Q5T4D3 741 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 LRRC66Q68CR7 880 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 GRAMD4Q6IC98 578 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 SULT1C3Q6IMI6 304 aa8.77□□□□□ -1.01
SYNE1-217ENST00000466159 CNKSR3Q6P9H4 555 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms