RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ZIC2O95409 532 aaPredicted RBP17.37■□□□□ 0.37
COL7A1-205ENST00000465238 POLBP06746 335 aa17.37■□□□□ 0.37
COL7A1-205ENST00000465238 CCL4P13236 92 aa17.37■□□□□ 0.37
COL7A1-205ENST00000465238 FASLGP48023 281 aa17.37■□□□□ 0.37
COL7A1-205ENST00000465238 GPLD1P80108 840 aa17.37■□□□□ 0.37
COL7A1-205ENST00000465238 SRSF6Q13247 344 aaKnown RBP17.37■□□□□ 0.37
COL7A1-205ENST00000465238 TMEM135Q86UB9 458 aa17.37■□□□□ 0.37
COL7A1-205ENST00000465238 ZNF547Q8IVP9 402 aa17.37■□□□□ 0.37
COL7A1-205ENST00000465238 ZSCAN1Q8NBB4 408 aa17.37■□□□□ 0.37
COL7A1-205ENST00000465238 AGBL5Q8NDL9 886 aa17.37■□□□□ 0.37
COL7A1-205ENST00000465238 TAAR9Q96RI9 348 aa17.37■□□□□ 0.37
COL7A1-205ENST00000465238 EBNA1BP2Q99848 306 aaKnown RBP17.37■□□□□ 0.37
COL7A1-205ENST00000465238 NAT9Q9BTE0 207 aa17.37■□□□□ 0.37
COL7A1-205ENST00000465238 KCNK4Q9NYG8 393 aa17.37■□□□□ 0.37
COL7A1-205ENST00000465238 PCDHGA3Q9Y5H0 932 aa17.37■□□□□ 0.37
COL7A1-205ENST00000465238 SDK2Q58EX2 2172 aa17.37■□□□□ 0.37
COL7A1-205ENST00000465238 PIKFYVEQ9Y2I7 2098 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 IGLV3-16A0A075B6K0 115 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 STMND1H3BQB6 276 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 ZNF500O60304 480 aaPredicted RBP17.36■□□□□ 0.37
COL7A1-205ENST00000465238 SNX2O60749 519 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 USP1O94782 785 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 PGAM1P18669 254 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 NSG1P42857 185 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 SLC7A5Q01650 507 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 CAV1Q03135 178 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 MSS51Q4VC12 460 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 NKAIN2Q5VXU1 208 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 MRNIPQ6NTE8 343 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 SDCCAG8Q86SQ7 713 aaPredicted RBP17.36■□□□□ 0.37
COL7A1-205ENST00000465238 VASH2Q86V25 355 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 AMZ2Q86W34 360 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 AGGF1Q8N302 714 aaeCLIP17.36■□□□□ 0.37
COL7A1-205ENST00000465238 SFRP1Q8N474 314 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 NOA1Q8NC60 698 aaKnown RBP17.36■□□□□ 0.37
COL7A1-205ENST00000465238 LRRC39Q96DD0 335 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 PWWP2AQ96N64 755 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 TRIM56Q9BRZ2 755 aaKnown RBP17.36■□□□□ 0.37
COL7A1-205ENST00000465238 CARD6Q9BX69 1037 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 OSGEPL1Q9H4B0 414 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 SLC23A2Q9UGH3 650 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 DNAJC16Q9Y2G8 782 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 PCDHGA4Q9Y5G9 962 aa17.36■□□□□ 0.37
COL7A1-205ENST00000465238 ESPNB1AK53 854 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 F8W8V4 182 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 PFDN6O15212 129 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 TP73O15350 636 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 BANF1O75531 89 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 AP2A2O94973 939 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 TTC4O95801 387 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 THRAP10827 490 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 FGF3P11487 239 aaPredicted RBP17.35■□□□□ 0.37
COL7A1-205ENST00000465238 IDSP22304 550 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 CSTF2P33240 577 aaKnown RBP eCLIP17.35■□□□□ 0.37
COL7A1-205ENST00000465238 TTPAP49638 278 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 CLCNKAP51800 687 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 DRG2P55039 364 aaKnown RBP17.35■□□□□ 0.37
COL7A1-205ENST00000465238 PLTPP55058 493 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 PDIA2Q13087 525 aaKnown RBP17.35■□□□□ 0.37
COL7A1-205ENST00000465238 THOC5Q13769 683 aaKnown RBP17.35■□□□□ 0.37
COL7A1-205ENST00000465238 LONRF1Q17RB8 773 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 BCL7AQ4VC05 210 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 GLE1Q53GS7 698 aaKnown RBP17.35■□□□□ 0.37
COL7A1-205ENST00000465238 HP1BP3Q5SSJ5 553 aaPredicted RBP17.35■□□□□ 0.37
COL7A1-205ENST00000465238 TMEM71Q6P5X7 295 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 C11orf96Q7Z7L8 435 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 BEND7Q8N7W2 519 aaPredicted RBP17.35■□□□□ 0.37
COL7A1-205ENST00000465238 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.35■□□□□ 0.37
COL7A1-205ENST00000465238 SLC37A2Q8TED4 501 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 NAT14Q8WUY8 206 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 SLC38A3Q99624 504 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 ARHGAP9Q9BRR9 750 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 VPS37BQ9H9H4 285 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 GRHL1Q9NZI5 618 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 MARCH4Q9P2E8 410 aaPredicted RBP17.35■□□□□ 0.37
COL7A1-205ENST00000465238 FAM169AQ9Y6X4 670 aa17.35■□□□□ 0.37
COL7A1-205ENST00000465238 ZCWPW2A0A1B0GU75 182 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 KLHL33A6NCF5 533 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 GOLGA8KD6RF30 607 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 GOLGA8TH3BQL2 631 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 QSOX1O00391 747 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 NDUFS3O75489 264 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 SLC2A4P14672 509 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 ARNTP27540 789 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 PBLDP30039 288 aaPredicted RBP17.34■□□□□ 0.37
COL7A1-205ENST00000465238 CSF2RBP32927 897 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 ELK3P41970 407 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 ARCN1P48444 511 aaKnown RBP17.34■□□□□ 0.37
COL7A1-205ENST00000465238 ATP1A2P50993 1020 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 GUCY2DQ02846 1103 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 SEMA3AQ14563 771 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 LINC00303Q3SY05 128 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 SPANXN3Q5MJ09 141 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.34■□□□□ 0.37
COL7A1-205ENST00000465238 NEPROQ6NW34 567 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 PACS1Q6VY07 963 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 CENPUQ71F23 418 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 LDB1Q86U70 411 aaPredicted RBP17.34■□□□□ 0.37
COL7A1-205ENST00000465238 MYO18BQ8IUG5 2567 aa17.34■□□□□ 0.37
COL7A1-205ENST00000465238 CLDN19Q8N6F1 224 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms