RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 AMZ1Q400G9 498 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 SNX20Q7Z614 316 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 MSL3Q8N5Y2 521 aaKnown RBP16.95■□□□□ 0.3
PTPRF-209ENST00000438120 SRFBP1Q8NEF9 429 aaKnown RBP16.95■□□□□ 0.3
PTPRF-209ENST00000438120 ZNF516Q92618 1163 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 HTRA1Q92743 480 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 PYCR2Q96C36 320 aa16.95■□□□□ 0.3
PTPRF-209ENST00000438120 MNDAP41218 407 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 TMPRSS11AQ6ZMR5 421 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 CLEC20AQ6ZU45 233 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 SNX33Q8WV41 574 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 PMM1Q92871 262 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 RNF31Q96EP0 1072 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 IRAK3Q9Y616 596 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 MYCLP1P12525 358 aaPredicted RBP16.94■□□□□ 0.3
PTPRF-209ENST00000438120 CAMK1Q14012 370 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 FRRS1Q6ZNA5 592 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 THAP5Q7Z6K1 395 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 MAGEB17A8MXT2 336 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 CTSOP43234 321 aaPredicted RBP16.94■□□□□ 0.3
PTPRF-209ENST00000438120 ARFIP1P53367 373 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 ABATP80404 500 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 FAM174BQ3ZCQ3 159 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 PPP2R2DQ66LE6 453 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 C11orf65Q8NCR3 313 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 RNF39Q9H2S5 420 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 RGS10O43665 173 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 CFHP08603 1231 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 THRBP10828 461 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 TIE1P35590 1138 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 MXD1Q05195 221 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 PTP4A2Q12974 167 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 SLC8B1Q6J4K2 584 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 FZD8Q9H461 694 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 PSMD9O00233 223 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 SYN1P17600 705 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 PTGER3P43115 390 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 CYP2U1Q7Z449 544 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 CYB5D2Q8WUJ1 264 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 SIX2Q9NPC8 291 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 ZNF358Q9NW07 568 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 DHRS7Q9Y394 339 aa16.94■□□□□ 0.3
PTPRF-209ENST00000438120 GRIA1P42261 906 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 ZNF846Q147U1 533 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 ARSIQ5FYB1 569 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 SEPHS1P49903 392 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 TMC8Q8IU68 726 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 IQCF2Q8IXL9 164 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 CLIP4Q8N3C7 705 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 PIWIL1Q96J94 861 aaKnown RBP16.93■□□□□ 0.3
PTPRF-209ENST00000438120 ZNF570Q96NI8 536 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 GAL3ST1Q99999 423 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 DSN1Q9H410 356 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 MTRRQ9UBK8 725 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 COMMD3-BMI1R4GMX3 469 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 PPEF2O14830 753 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 NOBOXO60393 691 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 STATHP02808 62 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 TCF4P15884 667 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 MC1RQ01726 317 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 TNFAIP8L2Q6P589 184 aaPredicted RBP16.93■□□□□ 0.3
PTPRF-209ENST00000438120 GALNTL5Q7Z4T8 443 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 CCSER2Q9H7U1 834 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 CCDC162PA2VCL2 907 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 NEMP2A6NFY4 417 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 ESR1P03372 595 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 DBIP07108 87 aaKnown RBP16.93■□□□□ 0.3
PTPRF-209ENST00000438120 ZNF483Q8TF39 744 aaPredicted RBP16.93■□□□□ 0.3
PTPRF-209ENST00000438120 SMPDL3BQ92485 455 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 ARHGEF33A8MVX0 844 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 NSG1P42857 185 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 CARTPTQ16568 116 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 GFOD2Q3B7J2 385 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 S100ZQ8WXG8 99 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 CKLFQ9UBR5 152 aa16.93■□□□□ 0.3
PTPRF-209ENST00000438120 DYTNA2CJ06 578 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 RIIAD1A6NNX1 92 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 ALOX5P09917 674 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 UNGP13051 313 aaPredicted RBP16.92■□□□□ 0.3
PTPRF-209ENST00000438120 ZNF8P17098 575 aaPredicted RBP16.92■□□□□ 0.3
PTPRF-209ENST00000438120 STARP49675 285 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 ACTR3P61158 418 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 GRSF1Q12849 480 aaKnown RBP eCLIP16.92■□□□□ 0.3
PTPRF-209ENST00000438120 SLC38A4Q969I6 547 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 PRODHO43272 600 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 HCRTO43612 131 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 ANGPTL1O95841 491 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 AHCYP23526 432 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 RPS9P46781 194 aaKnown RBP16.92■□□□□ 0.3
PTPRF-209ENST00000438120 C1QTNF8P60827 252 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 CBX3Q13185 183 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 TMEM214Q6NUQ4 689 aaKnown RBP16.92■□□□□ 0.3
PTPRF-209ENST00000438120 HLA-DQB2P05538 268 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 CLUP10909 449 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 IL12BP29460 328 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 UBAP2Q5T6F2 1119 aaKnown RBP16.92■□□□□ 0.3
PTPRF-209ENST00000438120 TTC29Q8NA56 475 aaPredicted RBP16.92■□□□□ 0.3
PTPRF-209ENST00000438120 GIPC3Q8TF64 312 aa16.92■□□□□ 0.3
PTPRF-209ENST00000438120 C11orf24Q96F05 449 aaPredicted RBP16.92■□□□□ 0.3
PTPRF-209ENST00000438120 CHCHD6Q9BRQ6 235 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms