RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 UGT8Q16880 541 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 DARS2Q6PI48 645 aaKnown RBP14.13□□□□□ -0.15
SDC1-204ENST00000429035 MICALCLQ6ZW33 695 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 BPHLQ86WA6 291 aaPredicted RBP14.13□□□□□ -0.15
SDC1-204ENST00000429035 FAM26EQ8N5C1 309 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 CCDC110Q8TBZ0 833 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 ACTL9Q8TC94 416 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 SEC14L1Q92503 715 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 ULK4Q96C45 1275 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 ZNF501Q96CX3 271 aaPredicted RBP14.13□□□□□ -0.15
SDC1-204ENST00000429035 FCRL4Q96PJ5 515 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 FERD3LQ96RJ6 166 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 HGH1Q9BTY7 390 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 SLC25A23Q9BV35 468 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 KLHL25Q9H0H3 589 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 CHST8Q9H2A9 424 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 LUC7LQ9NQ29 371 aaKnown RBP14.13□□□□□ -0.15
SDC1-204ENST00000429035 KCND1Q9NSA2 647 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 FARSAQ9Y285 508 aaKnown RBP14.13□□□□□ -0.15
SDC1-204ENST00000429035 AAR2Q9Y312 384 aaKnown RBP14.13□□□□□ -0.15
SDC1-204ENST00000429035 PCDHA13Q9Y5I0 950 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 HEBP2Q9Y5Z4 205 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 RELNP78509 3460 aa14.13□□□□□ -0.15
SDC1-204ENST00000429035 CCDC66A2RUB6 948 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 C5orf60A6NFR6 353 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 SLC9B1P1A6NJY1 282 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 IFRD1O00458 451 aaPredicted RBP14.12□□□□□ -0.15
SDC1-204ENST00000429035 PJA2O43164 708 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 VPS4BO75351 444 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 LCA5LO95447 670 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 PTMAP06454 111 aaKnown RBP14.12□□□□□ -0.15
SDC1-204ENST00000429035 KLK3P07288 261 aaPredicted RBP14.12□□□□□ -0.15
SDC1-204ENST00000429035 RBP3P10745 1247 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 CYP2A7P20853 494 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 MC4RP32245 332 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 CYLC1P35663 651 aaPredicted RBP14.12□□□□□ -0.15
SDC1-204ENST00000429035 PTGIRP43119 386 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 LMAN1P49257 510 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 PRLHRP49683 370 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 HADHBP55084 474 aaKnown RBP14.12□□□□□ -0.15
SDC1-204ENST00000429035 ABRQ12979 859 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 ZRANB3Q5FWF4 1079 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 ANKRD20A2Q5SQ80 823 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 ANKRD20A1Q5TYW2 823 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 ANKRD20A3Q5VUR7 823 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 APLFQ8IW19 511 aaPredicted RBP14.12□□□□□ -0.15
SDC1-204ENST00000429035 ENDOVQ8N8Q3 282 aaKnown RBP14.12□□□□□ -0.15
SDC1-204ENST00000429035 ACVR1CQ8NER5 493 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 LCN9Q8WX39 176 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 THAP4Q8WY91 577 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 CPT1BQ92523 772 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 LRRC45Q96CN5 670 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 COPS8Q99627 209 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 TBL1YQ9BQ87 522 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 GPR87Q9BY21 358 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 TRIM5Q9C035 493 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 SRMSQ9H3Y6 488 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 COG4Q9H9E3 785 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 MAP10Q9P2G4 905 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 POMT2Q9UKY4 750 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 VPS4AQ9UN37 437 aa14.12□□□□□ -0.15
SDC1-204ENST00000429035 BLACEA4D250 179 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 KLHL33A6NCF5 533 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 PYGMP11217 842 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 UQCRFS1P47985 274 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 PREPP48147 710 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 ZNF140P52738 457 aaPredicted RBP14.11□□□□□ -0.15
SDC1-204ENST00000429035 XIAPP98170 497 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 TBX2Q13207 712 aaPredicted RBP14.11□□□□□ -0.15
SDC1-204ENST00000429035 SKOR2Q2VWA4 1001 aaPredicted RBP14.11□□□□□ -0.15
SDC1-204ENST00000429035 FAM69BQ5VUD6 431 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 SNX20Q7Z614 316 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 HOOK3Q86VS8 718 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 NXPE1Q8N323 547 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 TC2NQ8N9U0 490 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 OR8K5Q8NH50 307 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 DNAJC1Q96KC8 554 aaKnown RBP14.11□□□□□ -0.15
SDC1-204ENST00000429035 SPATA13Q96N96 652 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 CCM2Q9BSQ5 444 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 OSBPL8Q9BZF1 889 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 ING2Q9H160 280 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 VPS37BQ9H9H4 285 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 LUZP4Q9P127 313 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 CCDC88CQ9P219 2028 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 BTRCQ9Y297 605 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 FER1L5A0AVI2 2057 aa14.11□□□□□ -0.15
SDC1-204ENST00000429035 SNRNP200O75643 2136 aaKnown RBP14.11□□□□□ -0.15
SDC1-204ENST00000429035 LRRK2Q5S007 2527 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 CCDC78A2IDD5 438 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 MATN2O00339 956 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 BTN3A1O00481 513 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 MAP3K7O43318 606 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 SGTAO43765 313 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 PRSS56P0CW18 603 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 ATP1B2P14415 290 aaPredicted RBP14.1□□□□□ -0.15
SDC1-204ENST00000429035 PVRP15151 417 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 ST6GAL1P15907 406 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 CTNNA1P35221 906 aaKnown RBP14.1□□□□□ -0.15
SDC1-204ENST00000429035 ADRA1AP35348 466 aa14.1□□□□□ -0.15
SDC1-204ENST00000429035 HADHAP40939 763 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms