RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ACTR3BQ9P1U1 418 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 RABL2AQ9UBK7 228 aaPredicted RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 GABRQQ9UN88 632 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 TRIM17Q9Y577 477 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 RAI2Q9Y5P3 530 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 TRPV2Q9Y5S1 764 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 SNX5Q9Y5X3 404 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 PRSS21Q9Y6M0 314 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 MYOFQ9NZM1 2061 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 PIKFYVEQ9Y2I7 2098 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 BRCA1P38398 1863 aaKnown RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 ZNF487B1APH4 448 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 F5H5T6 163 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 SAP18O00422 153 aaKnown RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 AP1G1O43747 822 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 VPS26AO75436 327 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 PRSS23O95084 383 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 VIPP01282 170 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 PBLDP30039 288 aaPredicted RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 IDUAP35475 653 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 CPT1AP50416 773 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 STC1P52823 247 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 PRKG2Q13237 762 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 RUNDC3AQ59EK9 446 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 VARS2Q5ST30 1063 aaKnown RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 ADNP2Q6IQ32 1131 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 PAGE2Q7Z2X7 111 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 IGFN1Q86VF2 1251 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 FAM217AQ8IXS0 508 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 SYTL1Q8IYJ3 562 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 FAR2Q96K12 515 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 APOLD1Q96LR9 279 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 ACBD6Q9BR61 282 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 INIPQ9NRY2 104 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 MED16Q9Y2X0 877 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 PTCH2Q9Y6C5 1203 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 MBLAC1A4D2B0 266 aaPredicted RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 PSMD3O43242 534 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 IDO1P14902 403 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 POU1F1P28069 291 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 HTR1BP28222 390 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 OXCT1P55809 520 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 GRB14Q14449 540 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 RFTN1Q14699 578 aaPredicted RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 SETMARQ53H47 684 aaPredicted RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 SULT1C3Q6IMI6 304 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 GPR153Q6NV75 609 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 ZNF621Q6ZSS3 439 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 C8orf59Q8N0T1 100 aaPredicted RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 NLGN4XQ8N0W4 816 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 BEND7Q8N7W2 519 aaPredicted RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 ZNF366Q8N895 744 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 TRPV1Q8NER1 839 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 NETO1Q8TDF5 533 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 TAMM41Q96BW9 452 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 SLC47A1Q96FL8 570 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 ZFYVE19Q96K21 471 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 MTERF1Q99551 399 aaKnown RBP8.51□□□□□ -1.05
USP40-203ENST00000427112 BDH2Q9BUT1 245 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 DPY30Q9C005 99 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 AMBRA1Q9C0C7 1298 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 MFSD1Q9H3U5 465 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 HIPK3Q9H422 1215 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 TIMMDC1Q9NPL8 285 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 TAS2R16Q9NYV7 291 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 GTF2IRD1Q9UHL9 959 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 VPS28Q9UK41 221 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 PCDHA9Q9Y5H5 950 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 PPP2R3BQ9Y5P8 575 aa8.51□□□□□ -1.05
USP40-203ENST00000427112 COL1A2P08123 1366 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 FUOMA2VDF0 154 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 LOC730098B7Z3J9 87 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 SLC7A4O43246 635 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 SLC25A14O95258 325 aaPredicted RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 BMP2P12643 396 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 FDXRP22570 491 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 GTF2E2P29084 291 aaKnown RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 PTGER1P34995 402 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 IDH2P48735 452 aaKnown RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 HCAR3P49019 387 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 RPL34P49207 117 aaKnown RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 DNAJB13P59910 316 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 MAP2K5Q13163 448 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 RAPSNQ13702 412 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 ATP6AP1Q15904 470 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 SPOUT1Q5T280 376 aaKnown RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 ZCCHC8Q6NZY4 707 aaKnown RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 ADCK1Q86TW2 530 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 CNTN4Q8IWV2 1026 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 TMEM86AQ8N2M4 240 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 ANKFN1Q8N957 763 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 ATG16L2Q8NAA4 619 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 CGREF1Q99674 301 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 SMOC2Q9H3U7 446 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 ASB8Q9H765 288 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 NTN4Q9HB63 628 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 SPC25Q9HBM1 224 aa8.5□□□□□ -1.05
USP40-203ENST00000427112 SDR39U1Q9NRG7 319 aaPredicted RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 LEF1Q9UJU2 399 aaPredicted RBP8.5□□□□□ -1.05
USP40-203ENST00000427112 AGO1Q9UL18 857 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms