RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ZNF805Q5CZA5 627 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 RPUSD3Q6P087 351 aaKnown RBP2.03□□□□□ -2.08
VPS13A-206ENST00000376646 ZNF704Q6ZNC4 412 aaPredicted RBP2.03□□□□□ -2.08
VPS13A-206ENST00000376646 CACNA2D4Q7Z3S7 1137 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 DNAAF5Q86Y56 855 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 HACE1Q8IYU2 909 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 TMTC2Q8N394 836 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 MAPK1IP1LQ8NDC0 245 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 HM13Q8TCT9 377 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 LRRC59Q96AG4 307 aaKnown RBP2.03□□□□□ -2.08
VPS13A-206ENST00000376646 NUDCD1Q96RS6 583 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 KIFC3Q9BVG8 833 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 C1QTNF1Q9BXJ1 281 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 SIL1Q9H173 461 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 OSGEPL1Q9H4B0 414 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 EPB41L5Q9HCM4 733 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP2.03□□□□□ -2.08
VPS13A-206ENST00000376646 DNAJB4Q9UDY4 337 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 FBXW11Q9UKB1 542 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 PLAGL1Q9UM63 463 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 hCG_1809904A0A1W2PP81 198 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 A0A1W2PPE2 198 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 A0A1W2PR64 198 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 TSPY2A6NKD2 308 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 NR5A2O00482 541 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 PLPP2O43688 288 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 PCDH7O60245 1069 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 AVILO75366 819 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 DAB1O75553 588 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 TSPY3P0CV98 308 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 TSPY8P0CW00 308 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 CSF2RAP15509 400 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 TRIM21P19474 475 aaKnown RBP2.03□□□□□ -2.08
VPS13A-206ENST00000376646 MSH3P20585 1137 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 UGT1A1P22309 533 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 UBA1P22314 1058 aaKnown RBP2.03□□□□□ -2.08
VPS13A-206ENST00000376646 HOXC9P31274 260 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 FASLGP48023 281 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 GPR143P51810 404 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 PNLIPRP2P54317 469 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 UBXN2AP68543 259 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 TMF1P82094 1093 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 PPP2R2BQ00005 443 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 TSPY1Q01534 308 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 AIMP1Q12904 312 aaKnown RBP2.03□□□□□ -2.08
VPS13A-206ENST00000376646 GAGE5Q13069 117 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 GAGE6Q13070 117 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 MAD2L1Q13257 205 aaPredicted RBP2.03□□□□□ -2.08
VPS13A-206ENST00000376646 RARS2Q5T160 578 aaKnown RBP2.03□□□□□ -2.08
VPS13A-206ENST00000376646 NSUN5P2Q63ZY6 315 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 ZNF790Q6PG37 636 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 PAPD4Q6PIY7 484 aaKnown RBP2.03□□□□□ -2.08
VPS13A-206ENST00000376646 DENND5BQ6ZUT9 1274 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 KRT74Q7RTS7 529 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 GBGT1Q8N5D6 347 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 OR1J2Q8NGS2 313 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 UTP15Q8TED0 518 aaKnown RBP2.03□□□□□ -2.08
VPS13A-206ENST00000376646 SCRN2Q96FV2 425 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 CCDC34Q96HJ3 373 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 RADILQ96JH8 1075 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 DNAJC18Q9H819 358 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 MORF4L1Q9UBU8 362 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 CACNG5Q9UF02 275 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 GIMAP2Q9UG22 337 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 EXO1Q9UQ84 846 aaKnown RBP2.03□□□□□ -2.08
VPS13A-206ENST00000376646 B3GALT5Q9Y2C3 310 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 MRPS28Q9Y2Q9 187 aaKnown RBP2.03□□□□□ -2.08
VPS13A-206ENST00000376646 C2CD2Q9Y426 696 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 GLOD5A6NK44 160 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 EIF4E1BA6NMX2 242 aaKnown RBP2.02□□□□□ -2.09
VPS13A-206ENST00000376646 KRTAP16-1A8MUX0 517 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 KCNN4O15554 427 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 RSL1D1O76021 490 aaKnown RBP2.02□□□□□ -2.09
VPS13A-206ENST00000376646 ZWINTO95229 277 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 NR2F2P24468 414 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 PPP5CP53041 499 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 CD81P60033 236 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 GRAPQ13588 217 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 ARMC3Q5W041 872 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 Q75L30 129 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 ADGRA1Q86SQ6 560 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 CCDC190Q86UF4 302 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 ARID3BQ8IVW6 561 aaPredicted RBP2.02□□□□□ -2.09
VPS13A-206ENST00000376646 RASGEF1CQ8N431 466 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 SYT2Q8N9I0 419 aaPredicted RBP2.02□□□□□ -2.09
VPS13A-206ENST00000376646 POGLUT1Q8NBL1 392 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 GSDMBQ8TAX9 411 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 THAP6Q8TBB0 222 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 TRPC4APQ8TEL6 797 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 MOAP1Q96BY2 351 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 TMCO6Q96DC7 493 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 CNDP2Q96KP4 475 aaKnown RBP2.02□□□□□ -2.09
VPS13A-206ENST00000376646 ART5Q96L15 291 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 CEP295NLQ96MC4 621 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 AP1M1Q9BXS5 423 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 SLC35C2Q9NQQ7 365 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 TAB2Q9NYJ8 693 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 STK39Q9UEW8 545 aa2.02□□□□□ -2.09
VPS13A-206ENST00000376646 PPIEQ9UNP9 301 aaKnown RBP2.02□□□□□ -2.09
VPS13A-206ENST00000376646 TRPV2Q9Y5S1 764 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 144.1 ms