RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 TRIM25Q14258 630 aaKnown RBP16.52■□□□□ 0.23
CPSF4-201ENST00000292476 CHRNA6Q15825 494 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 CRY1Q16526 586 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 SPATS1Q496A3 300 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 UNC50Q53HI1 259 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 FOXB2Q5VYV0 432 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 PTRHD1Q6GMV3 140 aaKnown RBP16.52■□□□□ 0.23
CPSF4-201ENST00000292476 UGT2A3Q6UWM9 527 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 TMEM207Q6UWW9 146 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 RALGPS2Q86X27 583 aaPredicted RBP16.52■□□□□ 0.23
CPSF4-201ENST00000292476 UBALD2Q8IYN6 164 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 NXPE1Q8N323 547 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 ZNF366Q8N895 744 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 GPR26Q8NDV2 337 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 PHC3Q8NDX5 983 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 HMGCLL1Q8TB92 370 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 DNASE1L2Q92874 299 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 C19orf60Q96EN9 201 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 UNKQ9C0B0 810 aaKnown RBP16.52■□□□□ 0.23
CPSF4-201ENST00000292476 FAM83DQ9H4H8 585 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 MTG2Q9H4K7 406 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 FBRSQ9HAH7 460 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 SPAG4Q9NPE6 437 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 KCTD5Q9NXV2 234 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 ZDHHC3Q9NYG2 299 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 DUSP12Q9UNI6 340 aa16.52■□□□□ 0.23
CPSF4-201ENST00000292476 OAS3Q9Y6K5 1087 aaKnown RBP16.52■□□□□ 0.23
CPSF4-201ENST00000292476 SYNCRIPO60506 623 aaKnown RBP16.51■□□□□ 0.23
CPSF4-201ENST00000292476 VPS4BO75351 444 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 C1SP09871 688 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 ELFN1P0C7U0 828 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 ZCCHC18P0CG32 403 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 PRSS56P0CW18 603 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 HLA-EP13747 358 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 CHRM3P20309 590 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 MMP12P39900 470 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 SIGLEC14Q08ET2 396 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 ZNF284Q2VY69 593 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 LIN52Q52LA3 116 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 AGKQ53H12 422 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 SAMD4BQ5PRF9 694 aaKnown RBP16.51■□□□□ 0.23
CPSF4-201ENST00000292476 PRMT9Q6P2P2 845 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 SLC30A9Q6PML9 568 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 PARS2Q7L3T8 475 aaKnown RBP16.51■□□□□ 0.23
CPSF4-201ENST00000292476 TRMT11Q7Z4G4 463 aaKnown RBP16.51■□□□□ 0.23
CPSF4-201ENST00000292476 CHPFQ8IZ52 775 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 GALNT15Q8N3T1 639 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 ZNF513Q8N8E2 541 aaPredicted RBP16.51■□□□□ 0.23
CPSF4-201ENST00000292476 PHF21BQ96EK2 531 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 CHFRQ96EP1 664 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 MSANTD3Q96H12 275 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 FAM129BQ96TA1 746 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 COPS8Q99627 209 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 ZSCAN5AQ9BUG6 496 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 HDAC8Q9BY41 377 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 TNFRSF12AQ9NP84 129 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 PRSS16Q9NQE7 514 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 SMOXQ9NWM0 555 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 TMCO1Q9UM00 188 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 STON1Q9Y6Q2 735 aa16.51■□□□□ 0.23
CPSF4-201ENST00000292476 A0A0U1RQS6 177 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 CFAP99D6REC4 459 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 FBP2O00757 339 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 UBFD1O14562 309 aaKnown RBP16.5■□□□□ 0.23
CPSF4-201ENST00000292476 NRP2O60462 931 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 SUPT7LO94864 414 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 PABPC4LP0CB38 370 aaKnown RBP16.5■□□□□ 0.23
CPSF4-201ENST00000292476 GLULP15104 373 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 MRPL19P49406 292 aaKnown RBP16.5■□□□□ 0.23
CPSF4-201ENST00000292476 UGT3A2Q3SY77 523 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 TMEM31Q5JXX7 168 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 EGFLAMQ63HQ2 1017 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 TRAM1L1Q8N609 369 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 PCYOX1LQ8NBM8 494 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 NCSTNQ92542 709 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 PTERQ96BW5 349 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 DERL2Q9GZP9 239 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 ADA2Q9NZK5 511 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 KLHL42Q9P2K6 505 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 CD300AQ9UGN4 299 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 ZNF106Q9H2Y7 1883 aaKnown RBP16.5■□□□□ 0.23
CPSF4-201ENST00000292476 MUC22E2RYF6 1773 aaPredicted RBP16.5■□□□□ 0.23
CPSF4-201ENST00000292476 SMIM31A0A1B0GVY4 71 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 TMEM221A6NGB7 291 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 M0R296 226 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 QSOX1O00391 747 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 MRASO14807 208 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 ADH1BP00325 375 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 IL2P60568 153 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 TIAL1Q01085 375 aaKnown RBP eCLIP16.5■□□□□ 0.23
CPSF4-201ENST00000292476 ROR2Q01974 943 aaKnown RBP16.5■□□□□ 0.23
CPSF4-201ENST00000292476 RHDQ02161 417 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 COQ5Q5HYK3 327 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 CYHR1Q6ZMK1 362 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 MACC1Q6ZN28 852 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 ERN2Q76MJ5 926 aaKnown RBP16.5■□□□□ 0.23
CPSF4-201ENST00000292476 CYP2U1Q7Z449 544 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 STAG3L4Q8TBR4 150 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 ATOH8Q96SQ7 321 aa16.5■□□□□ 0.23
CPSF4-201ENST00000292476 SPATA16Q9BXB7 569 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms