RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 OBSL1O75147 1896 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 TRBV5-4A0A0C4DH59 114 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 TGM5O43548 720 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 CLIC3O95833 236 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 SERPINA4P29622 427 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 CCT8P50990 548 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 CDH15P55291 814 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 DDX53Q86TM3 631 aaKnown RBP18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 HID1Q8IV36 788 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 NXPE1Q8N323 547 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 OR2AP1Q8NGE2 309 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 ZFAND2BQ8WV99 257 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 TFAP2CQ92754 450 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 BIRC7Q96CA5 298 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 RHBDF1Q96CC6 855 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 ASIC4Q96FT7 647 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 CENPNQ96H22 339 aaPredicted RBP18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 COMMD3-BMI1R4GMX3 469 aa18.02■□□□□ 0.48
SHKBP1-201ENST00000291842 ANKRD28O15084 1053 aa18.02■□□□□ 0.47
SHKBP1-201ENST00000291842 H6PDO95479 791 aa18.02■□□□□ 0.47
SHKBP1-201ENST00000291842 EEFSECP57772 596 aaKnown RBP18.02■□□□□ 0.47
SHKBP1-201ENST00000291842 IRAK1BP1Q5VVH5 260 aa18.02■□□□□ 0.47
SHKBP1-201ENST00000291842 MYLIPQ8WY64 445 aa18.02■□□□□ 0.47
SHKBP1-201ENST00000291842 VOPP1Q96AW1 172 aa18.02■□□□□ 0.47
SHKBP1-201ENST00000291842 LRRC3Q9BY71 257 aa18.02■□□□□ 0.47
SHKBP1-201ENST00000291842 MBD1Q9UIS9 605 aaPredicted RBP18.02■□□□□ 0.47
SHKBP1-201ENST00000291842 ANAPC2Q9UJX6 822 aa18.02■□□□□ 0.47
SHKBP1-201ENST00000291842 CCL27Q9Y4X3 112 aa18.02■□□□□ 0.47
SHKBP1-201ENST00000291842 LOC730098B7Z3J9 87 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 SEC24DO94855 1032 aaPredicted RBP18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 GPIP06744 558 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 SRCP12931 536 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 MPPE1Q53F39 396 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 SLC44A4Q53GD3 710 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 PYCR3Q53H96 274 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 HTR3DQ70Z44 454 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 DET1Q7L5Y6 550 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 ISG20Q96AZ6 181 aaKnown RBP18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 ANKRD60Q9BZ19 345 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 EPB41L1Q9H4G0 881 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 NDUFA13Q9P0J0 144 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 CD84Q9UIB8 345 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 KRT87PA6NCN2 255 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 EI24O14681 340 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 SOCS5O75159 536 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 ENO2P09104 434 aaPredicted RBP18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 HTRA3P83110 453 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 ATP13A5Q4VNC0 1218 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 INTS11Q5TA45 600 aaKnown RBP18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 GLYATQ6IB77 296 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 GRAMD4Q6IC98 578 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 TRIML2Q8N7C3 387 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 CLHC1Q8NHS4 586 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 FIBINQ8TAL6 211 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 TMIGD2Q96BF3 282 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 RNF145Q96MT1 663 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 HTATIP2Q9BUP3 242 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 ZDHHC6Q9H6R6 413 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 OGDHLQ9ULD0 1010 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 ZNF490Q9ULM2 529 aaPredicted RBP18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 CCL26Q9Y258 94 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 MYRFQ9Y2G1 1151 aa18.01■□□□□ 0.47
SHKBP1-201ENST00000291842 SCN8AQ9UQD0 1980 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 H3BNH8 94 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 LEFTY2O00292 366 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 ACOX3O15254 700 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 HLA-FP30511 346 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 PTSQ03393 145 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 SULT1C3Q6IMI6 304 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 DNAJC14Q6Y2X3 702 aaPredicted RBP18■□□□□ 0.47
SHKBP1-201ENST00000291842 MACC1Q6ZN28 852 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 KRTCAP2Q8N6L1 136 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 SKA2Q8WVK7 121 aaPredicted RBP18■□□□□ 0.47
SHKBP1-201ENST00000291842 CYGBQ8WWM9 190 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 RMND5BQ96G75 393 aaPredicted RBP18■□□□□ 0.47
SHKBP1-201ENST00000291842 VPS50Q96JG6 964 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 CGREF1Q99674 301 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 SOX17Q9H6I2 414 aaPredicted RBP18■□□□□ 0.47
SHKBP1-201ENST00000291842 PNPLA3Q9NST1 481 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 TMEM39AQ9NV64 488 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 SLC4A7Q9Y6M7 1214 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 CROCCQ5TZA2 2017 aa18■□□□□ 0.47
SHKBP1-201ENST00000291842 H3BSA7 217 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 DFNA5O60443 496 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 ULK1O75385 1050 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 PARNO95453 639 aaKnown RBP17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 LRG1P02750 347 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 CCL5P13501 91 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 LHCGRP22888 699 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 VARSP26640 1264 aaKnown RBP17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 RFC2P35250 354 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 NR1H2P55055 460 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 B4GALNT1Q00973 533 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 ATP6AP1Q15904 470 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 FAM174BQ3ZCQ3 159 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 TMC8Q8IU68 726 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 DPP10Q8N608 796 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 ULK4Q96C45 1275 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 MPP4Q96JB8 637 aa17.99■□□□□ 0.47
SHKBP1-201ENST00000291842 CORO1BQ9BR76 489 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms