RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 DNM1LO00429 736 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 ALOX5P09917 674 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 PTP4A2Q12974 167 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 PGBD2Q6P3X8 592 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 TNFAIP8L2Q6P589 184 aaPredicted RBP11.31□□□□□ -0.6
USP53-201ENST00000274030 ERICH5Q6P6B1 374 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 FRRS1Q6ZNA5 592 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 PEX5LQ8IYB4 626 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 CLIP4Q8N3C7 705 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 SNX33Q8WV41 574 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 C12orf66Q96MD2 445 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 MRTO4Q9UKD2 239 aaKnown RBP11.31□□□□□ -0.6
USP53-201ENST00000274030 CCDC162PA2VCL2 907 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 UNGP13051 313 aaPredicted RBP11.31□□□□□ -0.6
USP53-201ENST00000274030 IL1R2P27930 398 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 STARP49675 285 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 AP1S1P61966 158 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 SCRN3Q0VDG4 424 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 SLC30A6Q6NXT4 461 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 RNF19BQ6ZMZ0 732 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 SLC51AQ86UW1 340 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 ATCAYQ86WG3 371 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 IQCF2Q8IXL9 164 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 MSL3Q8N5Y2 521 aaKnown RBP11.31□□□□□ -0.6
USP53-201ENST00000274030 TSEN15Q8WW01 171 aaKnown RBP11.31□□□□□ -0.6
USP53-201ENST00000274030 S100ZQ8WXG8 99 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 HPS1Q92902 700 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 DGCR14Q96DF8 476 aaKnown RBP11.31□□□□□ -0.6
USP53-201ENST00000274030 ZNF570Q96NI8 536 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 COPS4Q9BT78 406 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 DMAC2Q9NW81 257 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 CNTN6Q9UQ52 1028 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 DMTF1Q9Y222 760 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 ARHGEF33A8MVX0 844 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 MAGEB17A8MXT2 336 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 TULP2O00295 520 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 ALPIP09923 528 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 SLC35G6P0C7Q6 338 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 CD247P20963 164 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 STXBP1P61764 594 aaKnown RBP11.31□□□□□ -0.6
USP53-201ENST00000274030 GALNTL5Q7Z4T8 443 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 SNX20Q7Z614 316 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 FBXO15Q8NCQ5 510 aaPredicted RBP11.31□□□□□ -0.6
USP53-201ENST00000274030 UNC93B1Q9H1C4 597 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 RBPJLQ9UBG7 517 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 ERVW-1Q9UQF0 538 aa11.31□□□□□ -0.6
USP53-201ENST00000274030 CLDN4O14493 209 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 PPEF2O14830 753 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 NIPSNAP2O75323 286 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 GPD2P43304 727 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 CCR10P46092 362 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 MC1RQ01726 317 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 FOXM1Q08050 763 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 SULT1C3Q6IMI6 304 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 TMPRSS11AQ6ZMR5 421 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 CNTD1Q8N815 330 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 MROH1Q8NDA8 1641 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 OXCT2Q9BYC2 517 aaPredicted RBP11.3□□□□□ -0.6
USP53-201ENST00000274030 OR51V1Q9H2C8 321 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 WASF2Q9Y6W5 498 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 SIX3O95343 332 aaPredicted RBP11.3□□□□□ -0.6
USP53-201ENST00000274030 CLEC20AQ6ZU45 233 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 SRFBP1Q8NEF9 429 aaKnown RBP11.3□□□□□ -0.6
USP53-201ENST00000274030 SLC38A4Q969I6 547 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 FZD8Q9H461 694 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 HCRTO43612 131 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 SHOX2O60902 331 aaPredicted RBP11.3□□□□□ -0.6
USP53-201ENST00000274030 STATHP02808 62 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 PTGER3P43115 390 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 SLC13A2Q13183 592 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 PCBP2Q15366 365 aaKnown RBP eCLIP11.3□□□□□ -0.6
USP53-201ENST00000274030 NDUFA9Q16795 377 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 UBAP2Q5T6F2 1119 aaKnown RBP11.3□□□□□ -0.6
USP53-201ENST00000274030 METTL21CQ5VZV1 264 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 RNF31Q96EP0 1072 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 DIRAS2Q96HU8 199 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 YIPF4Q9BSR8 244 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 CADM1Q9BY67 442 aaKnown RBP11.3□□□□□ -0.6
USP53-201ENST00000274030 PCDHAC1Q9H158 963 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 RPL26L1Q9UNX3 145 aaKnown RBP11.3□□□□□ -0.6
USP53-201ENST00000274030 PHF24Q9UPV7 400 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 FAM240BA0A1B0GVZ2 78 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 RHPN2P1A8MT19 583 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 AGPSO00116 658 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 ESR1P03372 595 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 SLC9B1Q4ZJI4 515 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 SLC8B1Q6J4K2 584 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 OGFOD2Q6N063 350 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 CTU1Q7Z7A3 348 aaKnown RBP11.3□□□□□ -0.6
USP53-201ENST00000274030 HDDC3Q8N4P3 179 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 MEIOBQ8N635 442 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 SRMSQ9H3Y6 488 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 ING4Q9UNL4 249 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 CAMTA1Q9Y6Y1 1673 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 PSMD9O00233 223 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 ZBTB48P10074 688 aaPredicted RBP11.3□□□□□ -0.6
USP53-201ENST00000274030 AHCYP23526 432 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 HMGCS1Q01581 520 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 CAMK1Q14012 370 aa11.3□□□□□ -0.6
USP53-201ENST00000274030 PAQR3Q6TCH7 311 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms