RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CENPNQ96H22 339 aaPredicted RBP16.33■□□□□ 0.21
VPS54-201ENST00000272322 ING2Q9H160 280 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 ZNF696Q9H7X3 374 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 POLR1BQ9H9Y6 1135 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 CLK4Q9HAZ1 481 aaKnown RBP16.33■□□□□ 0.21
VPS54-201ENST00000272322 AGPAT4Q9NRZ5 378 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 PNPLA3Q9NST1 481 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 RHBDL2Q9NX52 303 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 DHRS7Q9Y394 339 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 SH3BP1Q9Y3L3 701 aa16.33■□□□□ 0.21
VPS54-201ENST00000272322 BBIP1A8MTZ0 92 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 RAD51BO15315 384 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 ITGALP20701 1170 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 HMGCLP35914 325 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 ZFP36L2P47974 494 aaKnown RBP16.33■□□□□ 0.2
VPS54-201ENST00000272322 BTG3Q14201 252 aaPredicted RBP16.33■□□□□ 0.2
VPS54-201ENST00000272322 MAPKAPK3Q16644 382 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 ANKRD26P1Q6NSI1 321 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 PPP4R4Q6NUP7 873 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 C8orf82Q6P1X6 216 aaPredicted RBP16.33■□□□□ 0.2
VPS54-201ENST00000272322 DHRSXQ8N5I4 330 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 SLC22A17Q8WUG5 538 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 CORO1BQ9BR76 489 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 SLC2A11Q9BYW1 496 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 DPY30Q9C005 99 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 RNF208Q9H0X6 261 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 HPS4Q9NQG7 708 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 TBC1D30Q9Y2I9 924 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 MYO15AQ9UKN7 3530 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 PTGES3LE9PB15 166 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 E2F6O75461 281 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 TRMUO75648 421 aaKnown RBP16.33■□□□□ 0.2
VPS54-201ENST00000272322 DEFB103AP81534 67 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 TMEM150AQ86TG1 271 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 RGL4Q8IZJ4 473 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 C10orf111Q8N326 155 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 SNRNP27Q8WVK2 155 aaKnown RBP16.33■□□□□ 0.2
VPS54-201ENST00000272322 PIH1D2Q8WWB5 315 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 MYRFLQ96LU7 910 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 MUS81Q96NY9 551 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 CARS2Q9HA77 564 aaKnown RBP16.33■□□□□ 0.2
VPS54-201ENST00000272322 SLC52A3Q9NQ40 469 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 CEPT1Q9Y6K0 416 aa16.33■□□□□ 0.2
VPS54-201ENST00000272322 PGLSO95336 258 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 IL7RP16871 459 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 TLE2Q04725 743 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 LMAN2Q12907 356 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 CRY1Q16526 586 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 ATP13A5Q4VNC0 1218 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 SPESP1Q6UW49 350 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 ZFRQ96KR1 1074 aaKnown RBP16.32■□□□□ 0.2
VPS54-201ENST00000272322 CGREF1Q99674 301 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 FAM126AQ9BYI3 521 aaPredicted RBP16.32■□□□□ 0.2
VPS54-201ENST00000272322 CCDC90BQ9GZT6 254 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 HCFC1R1Q9NWW0 138 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 CCL26Q9Y258 94 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 MAGEB3O15480 346 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 TACR1P25103 407 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 HOXD10P28358 340 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 RANBP1P43487 201 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 RGS4P49798 205 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 LRRC66Q68CR7 880 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 ITIH5Q86UX2 942 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 FAM162AQ96A26 154 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 ABCD2Q9UBJ2 740 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 LSM1O15116 133 aaKnown RBP16.32■□□□□ 0.2
VPS54-201ENST00000272322 ZBTB11O95625 1053 aaPredicted RBP16.32■□□□□ 0.2
VPS54-201ENST00000272322 CYP4B1P13584 511 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 PAX3P23760 479 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 PBLDP30039 288 aaPredicted RBP16.32■□□□□ 0.2
VPS54-201ENST00000272322 RPS9P46781 194 aaKnown RBP16.32■□□□□ 0.2
VPS54-201ENST00000272322 AARS2Q5JTZ9 985 aaKnown RBP16.32■□□□□ 0.2
VPS54-201ENST00000272322 ZNF697Q5TEC3 545 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 GALNT5Q7Z7M9 940 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 GALNT7Q86SF2 657 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 OR52E6Q96RD3 313 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 MYOCQ99972 504 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 ZDHHC4Q9NPG8 344 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 ADGRE2Q9UHX3 823 aa16.32■□□□□ 0.2
VPS54-201ENST00000272322 MTHFRP42898 656 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 CCT8P50990 548 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 SPIDRQ14159 915 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 SUSD1Q6UWL2 747 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 Q6ZVU0 165 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 GAREM2Q75VX8 874 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 OTOP2Q7RTS6 562 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 SPATA19Q7Z5L4 167 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 ADAMTSL2Q86TH1 951 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 HID1Q8IV36 788 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 VRK3Q8IV63 474 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 RIN3Q8TB24 985 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 TMBIM1Q969X1 311 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 HAUS8Q9BT25 410 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 TTLL2Q9BWV7 592 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 RSL24D1Q9UHA3 163 aaKnown RBP16.31■□□□□ 0.2
VPS54-201ENST00000272322 TEX28O15482 410 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 BMP2P12643 396 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 HOXB8P17481 243 aaPredicted RBP16.31■□□□□ 0.2
VPS54-201ENST00000272322 RPIAP49247 311 aa16.31■□□□□ 0.2
VPS54-201ENST00000272322 XKR7Q5GH72 579 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms