RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 RSL1D1O76021 490 aaKnown RBP18.87■□□□□ 0.61
UPF1-201ENST00000262803 CLCNKBP51801 687 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 DMPKQ09013 629 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 SERPINA9Q86WD7 417 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 C7orf61Q8IZ16 206 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 OMA1Q96E52 524 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 PCED1BQ96HM7 432 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 ART5Q96L15 291 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 ZNF347Q96SE7 839 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 COQ7Q99807 217 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 PLK2Q9NYY3 685 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 MARK1Q9P0L2 795 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 CFL2Q9Y281 166 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 MRPS7Q9Y2R9 242 aaKnown RBP18.87■□□□□ 0.61
UPF1-201ENST00000262803 CARD16Q5EG05 197 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 ACOT12Q8WYK0 555 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 ACAT2Q9BWD1 397 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 ZNF304Q9HCX3 659 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 DTLQ9NZJ0 730 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 DHRS7Q9Y394 339 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 NADKO95544 446 aaPredicted RBP18.87■□□□□ 0.61
UPF1-201ENST00000262803 INHAP05111 366 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 IDH3AP50213 366 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 LIN52Q52LA3 116 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 DCBLD1Q8N8Z6 715 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 ZBED6CLQ96FA7 236 aaPredicted RBP18.87■□□□□ 0.61
UPF1-201ENST00000262803 HIST1H2AAQ96QV6 131 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 FZD10Q9ULW2 581 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 TLR6Q9Y2C9 796 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 TEX46H3BTG2 121 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 CCKBRP32239 447 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 DNASE1L1P49184 302 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 LRRC32Q14392 662 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 PUS10Q3MIT2 529 aaKnown RBP18.87■□□□□ 0.61
UPF1-201ENST00000262803 SUN3Q8TAQ9 357 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 IKZF2Q9UKS7 526 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 TNFRSF11BO00300 401 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 SMPD1P17405 629 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 ASPAP45381 313 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 ZBTB6Q15916 424 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 ZSCAN2Q7Z7L9 614 aaPredicted RBP18.87■□□□□ 0.61
UPF1-201ENST00000262803 CFAP206Q8IYR0 622 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 FSTL5Q8N475 847 aaPredicted RBP18.87■□□□□ 0.61
UPF1-201ENST00000262803 C11orf49Q9H6J7 331 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 HHATLQ9HCP6 504 aa18.87■□□□□ 0.61
UPF1-201ENST00000262803 KLRG2A4D1S0 409 aaPredicted RBP18.86■□□□□ 0.61
UPF1-201ENST00000262803 SOWAHBA6NEL2 793 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 GNAZP19086 355 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 MTHFRP42898 656 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 PPP3R1P63098 170 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 MED22Q15528 200 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 GPALPP1Q8IXQ4 340 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 ZZZ3Q8IYH5 903 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 AGAP2Q99490 1192 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 COMMD4Q9H0A8 199 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 M0R2N6 131 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 CASKO14936 926 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 WDR4P57081 412 aaKnown RBP18.86■□□□□ 0.61
UPF1-201ENST00000262803 LIPEQ05469 1076 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 PDGFRLQ15198 375 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 CA9Q16790 459 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 FBXO48Q5FWF7 155 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 DDI2Q5TDH0 399 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 IL23RQ5VWK5 629 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 CNKSR3Q6P9H4 555 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 IFNLR1Q8IU57 520 aaPredicted RBP18.86■□□□□ 0.61
UPF1-201ENST00000262803 XAGE5Q8WWM1 108 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 UPB1Q9UBR1 384 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 PDCD5O14737 125 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 GRK6P43250 576 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 NRG3P56975 720 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 SNAPC1Q16533 368 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 SH3PXD2AQ5TCZ1 1133 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 REP15Q6BDI9 236 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 NIPAL1Q6NVV3 410 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 RFWD3Q6PCD5 774 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 TAS2R1Q9NYW7 299 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 CDH7Q9ULB5 785 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 SNX10Q9Y5X0 201 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 A0A0X1KG70 313 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 C9JVG2 144 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 AGXTP21549 392 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 PEX2P28328 305 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 TMEM63BQ5T3F8 832 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 CPNE9Q8IYJ1 553 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 SLC35B2Q8TB61 432 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 FAM81AQ8TBF8 368 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 GIPC3Q8TF64 312 aa18.86■□□□□ 0.61
UPF1-201ENST00000262803 FAM149AA5PLN7 773 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 SPATA31D3P0C874 917 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 IGFBP5P24593 272 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 AQP1P29972 269 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 ATXN1P54253 815 aaKnown RBP18.85■□□□□ 0.61
UPF1-201ENST00000262803 BLMHQ13867 455 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 FAM189A2Q15884 450 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 C5orf22Q49AR2 442 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 SPATA31D4Q6ZUB0 917 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 ABHD13Q7L211 337 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 SLC9A6Q92581 669 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 GORASP1Q9BQQ3 440 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms