RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CCDC24Q8N4L8 307 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 WDSUB1Q8N9V3 476 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 OR7G2Q8NG99 324 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 SLC13A3Q8WWT9 602 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 KCNN1Q92952 543 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 OR52E6Q96RD3 313 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 SLC25A13Q9UJS0 675 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 FARSAQ9Y285 508 aaKnown RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 TAF6LQ9Y6J9 622 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 LMO7Q8WWI1 1683 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 SOBPA7XYQ1 873 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 EFCAB7A8K855 629 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 RB1P06400 928 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 C2P06681 752 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ANXA5P08758 320 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 GKN3PP0CG01 181 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 NOS3P29474 1203 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ARCN1P48444 511 aaKnown RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 SLC25A25Q6KCM7 469 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CORO6Q6QEF8 472 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CBWD2Q8IUF1 395 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CMTR2Q8IYT2 770 aaKnown RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 MAFIPQ8WZ33 124 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 PEX13Q92968 403 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 SH3YL1Q96HL8 342 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 PKP2Q99959 881 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CBWD1Q9BRT8 395 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 NUDT15Q9NV35 164 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 VPS51Q9UID3 782 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 TMX2Q9Y320 296 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 MAU2Q9Y6X3 613 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 RHPN2P1A8MT19 583 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 EPHB6O15197 1021 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 GH2P01242 217 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 MT-ND1P03886 318 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CYBBP04839 570 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF3P17036 446 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ADORA2BP29275 332 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 SLC5A2P31639 672 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CCNIQ14094 377 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CDK10Q15131 360 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 PROX2Q3B8N5 592 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 MBLAC2Q68D91 279 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 NCEH1Q6PIU2 408 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 TSPYL5Q86VY4 417 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 KLHL36Q8N4N3 616 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 SLC9A6Q92581 669 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 BTBD1Q9H0C5 482 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 POPDC3Q9HBV1 291 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 C1orf109Q9NX04 203 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 PCDHB1Q9Y5F3 818 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ZC3H4Q9UPT8 1303 aaKnown RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 A0A1W2PP18 115 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 F5H6K3 240 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 NARSO43776 548 aaKnown RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 SLC12A3P55017 1021 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 TGFB2P61812 414 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 RGS1Q08116 209 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 GAS6Q14393 721 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 SH3PXD2AQ5TCZ1 1133 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 OLFML2AQ68BL7 652 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 GK5Q6ZS86 529 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 OR52K2Q8NGK3 314 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 OR8K3Q8NH51 312 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 TFAP2CQ92754 450 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 KIF12Q96FN5 646 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 KCNIP3Q9Y2W7 256 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 COQ4Q9Y3A0 265 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 PCDHB3Q9Y5E6 796 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 KCNU1A8MYU2 1149 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 TNFRSF11BO00300 401 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ABL1P00519 1130 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 NTSP30990 170 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 RYKP34925 604 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ABCG1P45844 678 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 BLOC1S1P78537 153 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CD83Q01151 205 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 C2orf80Q0P641 193 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 RPA4Q13156 261 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 STRADAQ7RTN6 431 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 LDHDQ86WU2 507 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ZFPM1Q8IX07 1006 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 LRRC71Q8N4P6 559 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 OXR1Q8N573 874 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 NXPE2Q96DL1 559 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ACOX2Q99424 681 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 GTF2IRD1Q9UHL9 959 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 PPRC1Q5VV67 1664 aaKnown RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 KLRC2P26717 231 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 HLA-DMAP28067 261 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 PPP2R2BQ00005 443 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 IFI44LQ53G44 452 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 RAB12Q6IQ22 244 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 PET117Q6UWS5 81 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 GCNT7Q6ZNI0 430 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 NAT8LQ8N9F0 302 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 PABPC5Q96DU9 382 aaKnown RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 SMARCD1Q96GM5 515 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 LURAP1Q96LR2 239 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 C10orf90Q96M02 699 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms