RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CTSCP53634 463 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 CASP6P55212 293 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 RPL7AP62424 266 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 COG7P83436 770 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 ZBED6P86452 979 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 MPP1Q00013 466 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 PLIN5Q00G26 463 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 PDE1BQ01064 536 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 MS4A2Q01362 244 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 NIPAL4Q0D2K0 466 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 NEXNQ0ZGT2 675 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 MAD2L1Q13257 205 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 ITGADQ13349 1161 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 MFAP5Q13361 173 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 OS9Q13438 667 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 BIRC3Q13489 604 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 EIF4A2Q14240 407 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 FRG1Q14331 258 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 IRF3Q14653 427 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 RFTN1Q14699 578 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 NAB2Q15742 525 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 ADIPOQQ15848 244 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 TAF12Q16514 161 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 CCNG2Q16589 344 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 GSTA3Q16772 222 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 PNLIPRP3Q17RR3 467 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 C15orf32Q32M92 178 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 DPCR1Q3MIW9 517 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 TAF1BQ53T94 588 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 C2CD6Q53TS8 623 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 RARS2Q5T160 578 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 GPATCH4Q5T3I0 446 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 GRTP1Q5TC63 336 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 SNX30Q5VWJ9 437 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 TMEM198Q66K66 360 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 SIGIRRQ6IA17 410 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 KIAA0930Q6ICG6 404 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 TTI2Q6NXR4 508 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 BHLHB9Q6PI77 547 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 NCEH1Q6PIU2 408 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 CPLX2Q6PUV4 134 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 IL27RAQ6UWB1 636 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 PACS1Q6VY07 963 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 GLDNQ6ZMI3 551 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 MFSD6Q6ZSS7 791 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 TPRG1Q6ZUI0 275 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 DENND5BQ6ZUT9 1274 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 TMTC3Q6ZXV5 915 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 ZNF534Q76KX8 674 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 RRM2BQ7LG56 351 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 TBC1D1Q86TI0 1168 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 KCNMB4Q86W47 210 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 LONP2Q86WA8 852 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 ARMC8Q8IUR7 673 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 MAP7D3Q8IWC1 876 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 ARHGAP12Q8IWW6 846 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 DIS3L2Q8IYB7 885 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 CRYBG2Q8N1P7 616 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 ZCCHC9Q8N567 271 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 C1orf52Q8N6N3 182 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 L3MBTL4Q8NA19 623 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 PCYOX1LQ8NBM8 494 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 OR2T12Q8NG77 320 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 OR1J2Q8NGS2 313 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 OR2T11Q8NH01 316 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 KCNG4Q8TDN1 519 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 UTP15Q8TED0 518 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 ZFAND2BQ8WV99 257 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 RFFLQ8WZ73 363 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 SMPDL3BQ92485 455 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 FAM149B1Q96BN6 582 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 KIF1BPQ96EK5 621 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 ELMOD3Q96FG2 381 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 PRAC1Q96KF2 57 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 TBATAQ96M53 351 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 CEP295NLQ96MC4 621 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 C7orf26Q96N11 449 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 ZNF582Q96NG8 517 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 DACH2Q96NX9 599 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 OR2A14Q96R47 310 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 SOSTQ9BQB4 213 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 KXD1Q9BQD3 176 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 EIF2AK1Q9BQI3 630 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 LRRC61Q9BV99 259 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 PPIL3Q9H2H8 161 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 LRMDAQ9H2I8 198 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 ARRDC1-AS1Q9H2J1 176 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 RANBP17Q9H2T7 1088 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 SLC28A3Q9HAS3 691 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 APOBEC3GQ9HC16 384 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 ZBTB20Q9HC78 741 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 EPB41L5Q9HCM4 733 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 PREBQ9HCU5 417 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 TRPC7Q9HCX4 862 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 RANGRFQ9HD47 186 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 SIX2Q9NPC8 291 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 TCP11L1Q9NUJ3 509 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 PLCXD1Q9NUJ7 323 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 ZNF701Q9NV72 531 aaPredicted RBP0.4□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms