RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 IGFN1Q86VF2 1251 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 PDPRQ8NCN5 879 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 C3orf58Q8NDZ4 430 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 STON2Q8WXE9 905 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 NT5C3BQ969T7 300 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 KIAA1191Q96A73 305 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 ZFYVE19Q96K21 471 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 SMIM14Q96QK8 99 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 ARL15Q9NXU5 204 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 PDP1Q9P0J1 537 aaPredicted RBP12.43□□□□□ -0.42
LIG1-221ENST00000613670 DNAJC25-GNG10A0A024R161 153 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 TARM1B6A8C7 271 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 PGLSO95336 258 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 ZNF7P17097 686 aaPredicted RBP12.43□□□□□ -0.42
LIG1-221ENST00000613670 PBX3P40426 434 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 MADCAM1Q13477 382 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 CYBRD1Q53TN4 286 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 SPANXN4Q5MJ08 99 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 NIPAL1Q6NVV3 410 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 DTWD1Q8N5C7 304 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 OR13J1Q8NGT2 312 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 ACDQ96AP0 544 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 TEX37Q96LM6 180 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 FAM126AQ9BYI3 521 aaPredicted RBP12.43□□□□□ -0.42
LIG1-221ENST00000613670 LTB4R2Q9NPC1 389 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 KRT84Q9NSB2 600 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 AIG1Q9NVV5 245 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 TMA7Q9Y2S6 64 aaKnown RBP12.43□□□□□ -0.42
LIG1-221ENST00000613670 ACTL7AQ9Y615 435 aa12.43□□□□□ -0.42
LIG1-221ENST00000613670 LOC100130705A0A1B0GUX0 176 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 RFXANKO14593 260 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 MYO1DO94832 1006 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 SHMT2P34897 504 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 STC1P52823 247 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 EMP3P54852 163 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 TMBIM6P55061 237 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 SEMG2Q02383 582 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 UBE3AQ05086 875 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 HSPA14Q0VDF9 509 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 SLC22A16Q86VW1 577 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 DENND1CQ8IV53 801 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 CNTN4Q8IWV2 1026 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 TMEM151AQ8N4L1 468 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 YTHDF1Q9BYJ9 559 aaKnown RBP12.42□□□□□ -0.42
LIG1-221ENST00000613670 MARCH7Q9H992 704 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 ZNF556Q9HAH1 456 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 AGO1Q9UL18 857 aaKnown RBP12.42□□□□□ -0.42
LIG1-221ENST00000613670 SHROOM3Q8TF72 1996 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 FUCA1P04066 466 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 ENO2P09104 434 aaPredicted RBP12.42□□□□□ -0.42
LIG1-221ENST00000613670 COL6A1P12109 1028 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 EPB42P16452 691 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 ITGALP20701 1170 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 GNPDA1P46926 289 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 CD97P48960 835 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 MAD2L1Q13257 205 aaPredicted RBP12.42□□□□□ -0.42
LIG1-221ENST00000613670 GTF2H2Q13888 395 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 C18orf21Q32NC0 220 aaPredicted RBP12.42□□□□□ -0.42
LIG1-221ENST00000613670 GTF2H2CQ6P1K8 395 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 TBPL2Q6SJ96 375 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 TMEM207Q6UWW9 146 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 ZDHHC21Q8IVQ6 265 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 FRS2Q8WU20 508 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 GTF3C2Q8WUA4 911 aaPredicted RBP12.42□□□□□ -0.42
LIG1-221ENST00000613670 BTN2A3PQ96KV6 586 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 FAM32AQ9Y421 112 aaKnown RBP12.42□□□□□ -0.42
LIG1-221ENST00000613670 A0A1W2PQ67 120 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 RGS10O43665 173 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 MYCP01106 439 aaPredicted RBP12.42□□□□□ -0.42
LIG1-221ENST00000613670 INPP1P49441 399 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 CDKN1CP49918 316 aaPredicted RBP12.42□□□□□ -0.42
LIG1-221ENST00000613670 FOXM1Q08050 763 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 CD47Q08722 323 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 SEMA3BQ13214 749 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 BOP1Q14137 746 aaKnown RBP12.42□□□□□ -0.42
LIG1-221ENST00000613670 RBM48Q5RL73 367 aaKnown RBP12.42□□□□□ -0.42
LIG1-221ENST00000613670 ADAMTSL2Q86TH1 951 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 C11orf74Q86VG3 221 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 AADATQ8N5Z0 425 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 OR4F6Q8NGB9 312 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 SGCDQ92629 289 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 DACT3Q96B18 629 aaPredicted RBP12.42□□□□□ -0.42
LIG1-221ENST00000613670 LRTM1Q9HBL6 345 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 MRM3Q9HC36 420 aaKnown RBP12.42□□□□□ -0.42
LIG1-221ENST00000613670 SH3BP4Q9P0V3 963 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 VPS4AQ9UN37 437 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 PCDHGA8Q9Y5G5 932 aa12.42□□□□□ -0.42
LIG1-221ENST00000613670 BCAS1O75363 584 aaPredicted RBP12.41□□□□□ -0.42
LIG1-221ENST00000613670 MED26O95402 600 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 POLR2IP36954 125 aaKnown RBP12.41□□□□□ -0.42
LIG1-221ENST00000613670 PPP3CCP48454 512 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 COLEC12Q5KU26 742 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 LRRTM3Q86VH5 581 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 CLDN19Q8N6F1 224 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 OR10T2Q8NGX3 314 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 TRUB1Q8WWH5 349 aaKnown RBP12.41□□□□□ -0.42
LIG1-221ENST00000613670 L3HYPDHQ96EM0 354 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 APOLD1Q96LR9 279 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 PANX1Q96RD7 426 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 MYOCQ99972 504 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms