RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 TMTC4Q5T4D3 741 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 ZFYVE27Q5T4F4 411 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 ZDHHC20Q5W0Z9 365 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 FAM151BQ6UXP7 276 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 H2AFVQ71UI9 128 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 RHOT1Q8IXI2 618 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 BEND7Q8N7W2 519 aaPredicted RBP9.71□□□□□ -0.86
LIG1-209ENST00000596104 TMEM102Q8N9M5 508 aaPredicted RBP9.71□□□□□ -0.86
LIG1-209ENST00000596104 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.71□□□□□ -0.86
LIG1-209ENST00000596104 CPT1BQ92523 772 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 C19orf60Q96EN9 201 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 C12orf66Q96MD2 445 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 GBP4Q96PP9 640 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 TLR10Q9BXR5 811 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 SLC29A3Q9BZD2 475 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 WWP1Q9H0M0 922 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 PCMTD2Q9NV79 361 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 GPR83Q9NYM4 423 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 FAM153AQ9UHL3 310 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 LCMT1Q9UIC8 334 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 ERRFI1Q9UJM3 462 aaPredicted RBP9.71□□□□□ -0.86
LIG1-209ENST00000596104 POMT2Q9UKY4 750 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 ESPL1Q14674 2120 aa9.71□□□□□ -0.86
LIG1-209ENST00000596104 HIVEP3Q5T1R4 2406 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 GLYATL1P3A0A0U1RQE8 302 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 MGAT4DA6NG13 374 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 A6NL46 340 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 ENO4A6NNW6 628 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 DDX3YO15523 660 aaKnown RBP9.7□□□□□ -0.86
LIG1-209ENST00000596104 BUD23O43709 281 aaKnown RBP9.7□□□□□ -0.86
LIG1-209ENST00000596104 SGTAO43765 313 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 LCA5LO95447 670 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 CBX6O95503 412 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 MBD3O95983 291 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 GYPCP04921 128 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 MSL3P1P0C860 447 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 ZFXP17010 805 aaPredicted RBP9.7□□□□□ -0.86
LIG1-209ENST00000596104 PBLDP30039 288 aaPredicted RBP9.7□□□□□ -0.86
LIG1-209ENST00000596104 ATP1A4Q13733 1029 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 MESDQ14696 234 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 PPP2R5EQ16537 467 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 LONRF2Q1L5Z9 754 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 SIRPB2Q5JXA9 342 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 FNBP1LQ5T0N5 605 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 MED25Q71SY5 747 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 SYTL1Q8IYJ3 562 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 OR2L2Q8NH16 312 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 OR1L3Q8NH93 324 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 PRR7Q8TB68 274 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 NAT14Q8WUY8 206 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 CPLX3Q8WVH0 158 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 CTNNBL1Q8WYA6 563 aaPredicted RBP9.7□□□□□ -0.86
LIG1-209ENST00000596104 SNRNP40Q96DI7 357 aaKnown RBP9.7□□□□□ -0.86
LIG1-209ENST00000596104 OXNAD1Q96HP4 312 aaPredicted RBP9.7□□□□□ -0.86
LIG1-209ENST00000596104 MRGPRX2Q96LB1 330 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 RMDN2Q96LZ7 410 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 C1GALT1Q9NS00 363 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 SOHLH2Q9NX45 425 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.7□□□□□ -0.862e-6■■■■□ 22.1
LIG1-209ENST00000596104 HACD3Q9P035 362 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 ACSL5Q9ULC5 683 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 G3BP2Q9UN86 482 aaKnown RBP9.7□□□□□ -0.86
LIG1-209ENST00000596104 TNRC6AQ8NDV7 1962 aaKnown RBP9.7□□□□□ -0.86
LIG1-209ENST00000596104 MED13Q9UHV7 2174 aa9.7□□□□□ -0.86
LIG1-209ENST00000596104 KLHL33A6NCF5 533 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 SLC9B1P1A6NJY1 282 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 KRT1P04264 644 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 POLR2CP19387 275 aaPredicted RBP9.69□□□□□ -0.86
LIG1-209ENST00000596104 NFKB1P19838 968 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 HLA-DPA1P20036 260 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 HNRNPH3P31942 346 aaKnown RBP9.69□□□□□ -0.86
LIG1-209ENST00000596104 RRADP55042 308 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 FANCCQ00597 558 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 ITGA9Q13797 1035 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 PTPRCAPQ14761 206 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 NCF4Q15080 339 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 SLC1A5Q15758 541 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 SLC18A3Q16572 532 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 ASTE1Q2TB18 679 aaPredicted RBP9.69□□□□□ -0.86
LIG1-209ENST00000596104 PTCHD3Q3KNS1 767 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 PLEKHN1Q494U1 663 aaPredicted RBP9.69□□□□□ -0.86
LIG1-209ENST00000596104 BCL7AQ4VC05 210 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 CRB2Q5IJ48 1285 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 VWA5B1Q5TIE3 1220 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 LRRC38Q5VT99 294 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 ZNF385CQ66K41 422 aaPredicted RBP9.69□□□□□ -0.86
LIG1-209ENST00000596104 ARMC6Q6NXE6 501 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 DET1Q7L5Y6 550 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 GLT6D1Q7Z4J2 308 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 RFX6Q8HWS3 928 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 TICAM1Q8IUC6 712 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 SLC25A41Q8N5S1 370 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 LILRA3Q8N6C8 439 aaPredicted RBP9.69□□□□□ -0.86
LIG1-209ENST00000596104 BLOC1S5Q8TDH9 187 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 RNF25Q96BH1 459 aaPredicted RBP9.69□□□□□ -0.86
LIG1-209ENST00000596104 IQCDQ96DY2 449 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 CLIP3Q96DZ5 547 aa9.69□□□□□ -0.86
LIG1-209ENST00000596104 LINC00615Q96LM1 132 aaPredicted RBP9.69□□□□□ -0.86
LIG1-209ENST00000596104 MAK16Q9BXY0 300 aaKnown RBP9.69□□□□□ -0.86
LIG1-209ENST00000596104 PITPNM3Q9BZ71 974 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms