RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TMPRSS3P57727 454 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 BASP1P80723 227 aaKnown RBP14.78□□□□□ -0.04
TRIM28-205ENST00000595028 LAMB3Q13751 1172 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 TMEM164Q5U3C3 297 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 C4orf22Q6V702 233 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 TAS2R42Q7RTR8 314 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 FAM129CQ86XR2 697 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 RASGEF1CQ8N431 466 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 BMPERQ8N8U9 685 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 RMDN2Q96LZ7 410 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 WWP1Q9H0M0 922 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 IMP3Q9NV31 184 aaKnown RBP14.78□□□□□ -0.04
TRIM28-205ENST00000595028 OCIAD1Q9NX40 245 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.78□□□□□ -0.04
TRIM28-205ENST00000595028 KLHL3Q9UH77 587 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 ACSL5Q9ULC5 683 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 TCAF1Q9Y4C2 921 aa14.78□□□□□ -0.04
TRIM28-205ENST00000595028 BOD1L1Q8NFC6 3051 aa14.77□□□□□ -0.04
TRIM28-205ENST00000595028 OR51F1A6NGY5 319 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 EFCAB7A8K855 629 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 A8MU76 341 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 AMD1P17707 334 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 ADRA1DP25100 572 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 RHDQ02161 417 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 ACVR1Q04771 509 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 LY6DQ14210 128 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 ITIH4Q14624 930 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 TSTD2Q5T7W7 516 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 DUS1LQ6P1R4 473 aaKnown RBP14.77□□□□□ -0.05
TRIM28-205ENST00000595028 AFTPHQ6ULP2 937 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 NLRP9Q7RTR0 991 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 SLC35F6Q8N357 371 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 LILRA3Q8N6C8 439 aaPredicted RBP14.77□□□□□ -0.05
TRIM28-205ENST00000595028 PPHLN1Q8NEY8 458 aaKnown RBP14.77□□□□□ -0.05
TRIM28-205ENST00000595028 PEX13Q92968 403 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 ART4Q93070 314 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.77□□□□□ -0.05
TRIM28-205ENST00000595028 PBKQ96KB5 322 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 C12orf66Q96MD2 445 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 TAAR9Q96RI9 348 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 INSM2Q96T92 566 aaPredicted RBP14.77□□□□□ -0.05
TRIM28-205ENST00000595028 DDA1Q9BW61 102 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 COG4Q9H9E3 785 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 VPS37BQ9H9H4 285 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 SLC2A6Q9UGQ3 507 aa14.77□□□□□ -0.05
TRIM28-205ENST00000595028 CFAP20Q9Y6A4 193 aaKnown RBP14.77□□□□□ -0.05
TRIM28-205ENST00000595028 C17orf113A0A1B0GUU1 675 aa14.76□□□□□ -0.05
TRIM28-205ENST00000595028 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.76□□□□□ -0.05
TRIM28-205ENST00000595028 CAPN5O15484 640 aaPredicted RBP14.76□□□□□ -0.05
TRIM28-205ENST00000595028 SLC28A2O43868 658 aa14.76□□□□□ -0.05
TRIM28-205ENST00000595028 NSG1P42857 185 aa14.76□□□□□ -0.05
TRIM28-205ENST00000595028 RAB15P59190 212 aa14.76□□□□□ -0.05
TRIM28-205ENST00000595028 PLCL1Q15111 1095 aa14.76□□□□□ -0.05
TRIM28-205ENST00000595028 ZNF658BQ4V348 819 aaPredicted RBP14.76□□□□□ -0.05
TRIM28-205ENST00000595028 PACS1Q6VY07 963 aa14.76□□□□□ -0.05
TRIM28-205ENST00000595028 ZFAND4Q86XD8 727 aa14.76□□□□□ -0.05
TRIM28-205ENST00000595028 CLDN19Q8N6F1 224 aa14.76□□□□□ -0.05
TRIM28-205ENST00000595028 SPDYE1Q8NFV5 336 aaPredicted RBP14.76□□□□□ -0.05
TRIM28-205ENST00000595028 HDAC10Q969S8 669 aa14.76□□□□□ -0.05
TRIM28-205ENST00000595028 PDLIM2Q96JY6 352 aa14.76□□□□□ -0.05
TRIM28-205ENST00000595028 C9orf72Q96LT7 481 aa14.76□□□□□ -0.05
TRIM28-205ENST00000595028 ZNF778Q96MU6 729 aa14.76□□□□□ -0.05
TRIM28-205ENST00000595028 TGM7Q96PF1 710 aa14.76□□□□□ -0.05
TRIM28-205ENST00000595028 CPNE5Q9HCH3 593 aa14.76□□□□□ -0.05
TRIM28-205ENST00000595028 SIDT1Q9NXL6 827 aaKnown RBP14.76□□□□□ -0.05
TRIM28-205ENST00000595028 SLC39A1Q9NY26 324 aa14.76□□□□□ -0.05
TRIM28-205ENST00000595028 TTC7AQ9ULT0 858 aaPredicted RBP14.76□□□□□ -0.05
TRIM28-205ENST00000595028 PGRMC1O00264 195 aaKnown RBP14.75□□□□□ -0.05
TRIM28-205ENST00000595028 QSOX1O00391 747 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 TOX3O15405 576 aaPredicted RBP14.75□□□□□ -0.05
TRIM28-205ENST00000595028 KIF5CO60282 957 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 AP2A2O94973 939 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 GOT2P00505 430 aaKnown RBP14.75□□□□□ -0.05
TRIM28-205ENST00000595028 POLBP06746 335 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 GSTM1P09488 218 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 TPSB2P20231 275 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 LEPRP48357 1165 aaKnown RBP14.75□□□□□ -0.05
TRIM28-205ENST00000595028 SESN2P58004 480 aaPredicted RBP14.75□□□□□ -0.05
TRIM28-205ENST00000595028 GSTM4Q03013 218 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 TGIF1Q15583 401 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 TPSAB1Q15661 275 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 ANKS6Q68DC2 871 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 CAPRIN2Q6IMN6 1127 aaKnown RBP14.75□□□□□ -0.05
TRIM28-205ENST00000595028 TTC27Q6P3X3 843 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 KLHL35Q6PF15 583 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 ZNF534Q76KX8 674 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 PRSS42Q7Z5A4 293 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 DTX1Q86Y01 620 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 CFAP206Q8IYR0 622 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 JPH3Q8WXH2 748 aaPredicted RBP14.75□□□□□ -0.05
TRIM28-205ENST00000595028 ANP32BQ92688 251 aaKnown RBP14.75□□□□□ -0.05
TRIM28-205ENST00000595028 MS4A14Q96JA4 679 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 TEFMQ96QE5 360 aaKnown RBP14.75□□□□□ -0.05
TRIM28-205ENST00000595028 CCM2Q9BSQ5 444 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 ASPSCR1Q9BZE9 553 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 RAB33BQ9H082 229 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 OR52A5Q9H2C5 316 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 SMARCAL1Q9NZC9 954 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 EPHA6Q9UF33 1036 aa14.75□□□□□ -0.05
TRIM28-205ENST00000595028 B3GALT1Q9Y5Z6 326 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms