RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 KCTD16Q68DU8 428 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 OGFOD3Q6PK18 319 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 CRTC3Q6UUV7 619 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 IGDCC3Q8IVU1 814 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 EID2Q8N6I1 236 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 ARL10Q8N8L6 244 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 FAM46DQ8NEK8 389 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 HM13Q8TCT9 377 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 CDKL2Q92772 493 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 CFAP36Q96G28 342 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 RHOXF2Q9BQY4 288 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 CCM2Q9BSQ5 444 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 MOCS1Q9NZB8 636 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 TAAR2Q9P1P5 351 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 MARCH4Q9P2E8 410 aaPredicted RBP20.22■□□□□ 0.83
VPS53-210ENST00000571456 FTSJ1Q9UET6 329 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 ACSL5Q9ULC5 683 aa20.22■□□□□ 0.83
VPS53-210ENST00000571456 PRR19A6NJB7 356 aa20.21■□□□□ 0.83
VPS53-210ENST00000571456 LDOC1O95751 146 aaPredicted RBP20.21■□□□□ 0.83
VPS53-210ENST00000571456 JUPP14923 745 aa20.21■□□□□ 0.83
VPS53-210ENST00000571456 TNFRSF8P28908 595 aa20.21■□□□□ 0.83
VPS53-210ENST00000571456 MGAT5Q09328 741 aa20.21■□□□□ 0.83
VPS53-210ENST00000571456 RPA4Q13156 261 aa20.21■□□□□ 0.83
VPS53-210ENST00000571456 SEMA3AQ14563 771 aa20.21■□□□□ 0.83
VPS53-210ENST00000571456 HSP90AA5PQ58FG0 334 aa20.21■□□□□ 0.83
VPS53-210ENST00000571456 AGAP9Q5VTM2 703 aa20.21■□□□□ 0.83
VPS53-210ENST00000571456 CCDC25Q86WR0 208 aa20.21■□□□□ 0.83
VPS53-210ENST00000571456 NRROSQ86YC3 692 aa20.21■□□□□ 0.83
VPS53-210ENST00000571456 ANKMY2Q8IV38 441 aa20.21■□□□□ 0.83
VPS53-210ENST00000571456 SNIP1Q8TAD8 396 aaKnown RBP20.21■□□□□ 0.83
VPS53-210ENST00000571456 WDR83Q9BRX9 315 aaKnown RBP20.21■□□□□ 0.83
VPS53-210ENST00000571456 KLC4Q9NSK0 619 aa20.21■□□□□ 0.83
VPS53-210ENST00000571456 FBXO5Q9UKT4 447 aa20.21■□□□□ 0.83
VPS53-210ENST00000571456 CORO1CQ9ULV4 474 aaPredicted RBP20.21■□□□□ 0.83
VPS53-210ENST00000571456 KIR2DS5A0A0G2JLQ3 304 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 A0A0G2JNG1 304 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 PYCARD-AS1I3L0S3 204 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 KIR2DS3K7RE56 304 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 LIN7AO14910 233 aaPredicted RBP20.2■□□□□ 0.82
VPS53-210ENST00000571456 FFAR2O15552 330 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 SGTAO43765 313 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 PRSS56P0CW18 603 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 MCM3P25205 808 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 STX2P32856 288 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 LEPRP48357 1165 aaKnown RBP20.2■□□□□ 0.82
VPS53-210ENST00000571456 CARSP49589 748 aaKnown RBP20.2■□□□□ 0.82
VPS53-210ENST00000571456 ILKQ13418 452 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 KIR2DS5Q14953 304 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 FASTKD3Q14CZ7 662 aaKnown RBP20.2■□□□□ 0.82
VPS53-210ENST00000571456 DEFB133Q30KQ1 61 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 PROX2Q3B8N5 592 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 SLC30A9Q6PML9 568 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 SLC26A11Q86WA9 606 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 C2CD4AQ8NCU7 369 aaPredicted RBP20.2■□□□□ 0.82
VPS53-210ENST00000571456 LPGAT1Q92604 370 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 NAT6Q93015 286 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 WBP1Q96G27 269 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 TRIM56Q9BRZ2 755 aaKnown RBP20.2■□□□□ 0.82
VPS53-210ENST00000571456 P2RY12Q9H244 342 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 CCDC68Q9H2F9 335 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 DPEP2Q9H4A9 486 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 PPANQ9NQ55 473 aaKnown RBP20.2■□□□□ 0.82
VPS53-210ENST00000571456 ZFATQ9P243 1243 aa20.2■□□□□ 0.82
VPS53-210ENST00000571456 TEX15Q9BXT5 2789 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 ZW10O43264 779 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 SIGLEC6O43699 453 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 S1PR4O95977 384 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 TUBBP07437 444 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 CKMT1AP12532 417 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 F3P13726 295 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 AK4P27144 223 aaPredicted RBP20.19■□□□□ 0.82
VPS53-210ENST00000571456 ECHS1P30084 290 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 PHBP35232 272 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 HALP42357 657 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 CXADRP78310 365 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 TLE3Q04726 772 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 NR0B2Q15466 257 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 HP1BP3Q5SSJ5 553 aaPredicted RBP20.19■□□□□ 0.82
VPS53-210ENST00000571456 METRNLQ641Q3 311 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 PTRHD1Q6GMV3 140 aaKnown RBP20.19■□□□□ 0.82
VPS53-210ENST00000571456 ABRAXAS1Q6UWZ7 409 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 C3orf62Q6ZUJ4 267 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 DET1Q7L5Y6 550 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 CNPY4Q8N129 248 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 CLDN19Q8N6F1 224 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 GPR156Q8NFN8 814 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 CCL4L1Q8NHW4 92 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 ZDHHC1Q8WTX9 485 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 UBXN4Q92575 508 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 CNDP2Q96KP4 475 aaKnown RBP20.19■□□□□ 0.82
VPS53-210ENST00000571456 APOLD1Q96LR9 279 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 STN1Q9H668 368 aaKnown RBP20.19■□□□□ 0.82
VPS53-210ENST00000571456 IARS2Q9NSE4 1012 aaKnown RBP20.19■□□□□ 0.82
VPS53-210ENST00000571456 PRKAB1Q9Y478 270 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 PCDHGA1Q9Y5H4 931 aa20.19■□□□□ 0.82
VPS53-210ENST00000571456 DOPEY2Q9Y3R5 2298 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 UBA6A0AVT1 1052 aaPredicted RBP20.18■□□□□ 0.82
VPS53-210ENST00000571456 B8ZZF3 427 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 GOLGA8KD6RF30 607 aa20.18■□□□□ 0.82
VPS53-210ENST00000571456 GOLGA8TH3BQL2 631 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms