RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 MXI1P50539 228 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 EMP3P54852 163 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 DLX5P56178 289 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 UBASH3AP57075 661 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 UBE2IP63279 158 aaKnown RBP6.73□□□□□ -1.33
CHD3-213ENST00000571249 PMP22Q01453 160 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 DEFA6Q01524 100 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 NRG1Q02297 640 aaPredicted RBP6.73□□□□□ -1.33
CHD3-213ENST00000571249 NR1I3Q14994 352 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 GPR19Q15760 415 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 PTCHD3Q3KNS1 767 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 PLA2G4EQ3MJ16 856 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 BRMS1LQ5PSV4 323 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 FBXW10Q5XX13 1052 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 DENND2CQ68D51 928 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 CEP128Q6ZU80 1094 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 CHST15Q7LFX5 561 aaPredicted RBP6.73□□□□□ -1.33
CHD3-213ENST00000571249 PHLDB2Q86SQ0 1253 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 TMEM110Q86TL2 294 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 TRIM74Q86UV6 250 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 WDR75Q8IWA0 830 aaKnown RBP6.73□□□□□ -1.33
CHD3-213ENST00000571249 TTC30BQ8N4P2 665 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 DHTKD1Q96HY7 919 aaPredicted RBP6.73□□□□□ -1.33
CHD3-213ENST00000571249 ZNF641Q96N77 438 aaPredicted RBP6.73□□□□□ -1.33
CHD3-213ENST00000571249 ZNF830Q96NB3 372 aaPredicted RBP6.73□□□□□ -1.33
CHD3-213ENST00000571249 PLEKHG4BQ96PX9 1271 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 FERD3LQ96RJ6 166 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 DMRTA2Q96SC8 542 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 UCK1Q9HA47 277 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 LIMA1Q9UHB6 759 aaKnown RBP6.73□□□□□ -1.33
CHD3-213ENST00000571249 ADGRE2Q9UHX3 823 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 DNAI1Q9UI46 699 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 PPT2Q9UMR5 302 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 EDARQ9UNE0 448 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 PADI2Q9Y2J8 665 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 L3MBTL1Q9Y468 752 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 PCYT1BQ9Y5K3 369 aaPredicted RBP6.73□□□□□ -1.33
CHD3-213ENST00000571249 GPC6Q9Y625 555 aaPredicted RBP6.73□□□□□ -1.33
CHD3-213ENST00000571249 USF3Q68DE3 2245 aa6.73□□□□□ -1.33
CHD3-213ENST00000571249 TTC24A2A3L6 582 aaPredicted RBP6.72□□□□□ -1.33
CHD3-213ENST00000571249 OR5K4A6NMS3 321 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 KDELR3O43731 214 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 CALUO43852 315 aaPredicted RBP6.72□□□□□ -1.33
CHD3-213ENST00000571249 LCA5LO95447 670 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 F10P00742 488 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 SERPINC1P01008 464 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 VIPP01282 170 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 GLI1P08151 1106 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 F3P13726 295 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 NID1P14543 1247 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 BRAFP15056 766 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 CES1P23141 567 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 ETV3P41162 512 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 PRCPP42785 496 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 CAPZBP47756 277 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 TUBB4BP68371 445 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 CCZ1BP86790 482 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 CCZ1P86791 482 aaPredicted RBP6.72□□□□□ -1.33
CHD3-213ENST00000571249 PAK1Q13153 545 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 AIMP2Q13155 320 aaKnown RBP6.72□□□□□ -1.33
CHD3-213ENST00000571249 TUBB2AQ13885 445 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 PCBP2Q15366 365 aaKnown RBP eCLIP6.72□□□□□ -1.33
CHD3-213ENST00000571249 CYP2A13Q16696 494 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 OTUD1Q5VV17 481 aaPredicted RBP6.72□□□□□ -1.33
CHD3-213ENST00000571249 IRAK1BP1Q5VVH5 260 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 Q6ZPB1 254 aaPredicted RBP6.72□□□□□ -1.33
CHD3-213ENST00000571249 PPP1R32Q7Z5V6 425 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 ZNF354CQ86Y25 554 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 DNAAF5Q86Y56 855 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 DOLPP1Q86YN1 238 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 SYTL1Q8IYJ3 562 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 LZTR1Q8N653 840 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 PAF1Q8N7H5 531 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 FAM169BQ8N8A8 192 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 AVL9Q8NBF6 648 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 CHAC2Q8WUX2 184 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 CPT1BQ92523 772 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 CCDC47Q96A33 483 aaKnown RBP6.72□□□□□ -1.33
CHD3-213ENST00000571249 ZNF501Q96CX3 271 aaPredicted RBP6.72□□□□□ -1.33
CHD3-213ENST00000571249 NAP1L5Q96NT1 182 aaPredicted RBP6.72□□□□□ -1.33
CHD3-213ENST00000571249 TUBB2BQ9BVA1 445 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 SAMSN1Q9NSI8 373 aaKnown RBP6.72□□□□□ -1.33
CHD3-213ENST00000571249 PCMTD2Q9NV79 361 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 SEMA5BQ9P283 1151 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 ABI3Q9P2A4 366 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 LHX3Q9UBR4 397 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 PYCARDQ9ULZ3 195 aa6.72□□□□□ -1.33
CHD3-213ENST00000571249 C9J4A7 227 aa6.71□□□□□ -1.34
CHD3-213ENST00000571249 PSMA7O14818 248 aa6.71□□□□□ -1.34
CHD3-213ENST00000571249 HSF2BPO75031 334 aa6.71□□□□□ -1.34
CHD3-213ENST00000571249 CRYABP02511 175 aaKnown RBP6.71□□□□□ -1.34
CHD3-213ENST00000571249 ACP5P13686 325 aa6.71□□□□□ -1.34
CHD3-213ENST00000571249 EPB42P16452 691 aa6.71□□□□□ -1.34
CHD3-213ENST00000571249 CD53P19397 219 aa6.71□□□□□ -1.34
CHD3-213ENST00000571249 TFE3P19532 575 aaPredicted RBP6.71□□□□□ -1.34
CHD3-213ENST00000571249 NR2F2P24468 414 aa6.71□□□□□ -1.34
CHD3-213ENST00000571249 TEAD1P28347 426 aa6.71□□□□□ -1.34
CHD3-213ENST00000571249 PSMC2P35998 433 aaKnown RBP6.71□□□□□ -1.34
CHD3-213ENST00000571249 FOLR3P41439 243 aa6.71□□□□□ -1.34
CHD3-213ENST00000571249 SLC19A1P41440 591 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms