RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 LCA5LO95447 670 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 SLC4A1P02730 911 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 DRD2P14416 443 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 CDH3P22223 829 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 SERPINB6P35237 376 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 RORAP35398 523 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 KCNK10P57789 538 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 AIMP2Q13155 320 aaKnown RBP10.79□□□□□ -0.68
VPS53-207ENST00000570510 XRCC4Q13426 336 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 KRT33BQ14525 404 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 CLEC16AQ2KHT3 1053 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 GFRALQ6UXV0 394 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 B4GALNT4Q76KP1 1039 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 IRF2BP2Q7Z5L9 587 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 ADGRG6Q86SQ4 1221 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 CEP97Q8IW35 865 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 GPR135Q8IZ08 494 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 CARFQ8N187 725 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 ZNF653Q96CK0 615 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 CCDC120Q96HB5 630 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 AGPAT1Q99943 283 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 SYT11Q9BT88 431 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 PCDH9Q9HC56 1237 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 SYTL2Q9HCH5 934 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 RAD18Q9NS91 495 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 IMP3Q9NV31 184 aaKnown RBP10.79□□□□□ -0.68
VPS53-207ENST00000570510 SH3BGRL2Q9UJC5 107 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 PSMD13Q9UNM6 376 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 ABCA2Q9BZC7 2435 aa10.79□□□□□ -0.68
VPS53-207ENST00000570510 TACC2O95359 2948 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 OR6C74A6NCV1 312 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 FZD6O60353 706 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 MTX2O75431 263 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 CAPN1P07384 714 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 MYBL1P10243 752 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 ESRRAP11474 423 aaPredicted RBP10.78□□□□□ -0.68
VPS53-207ENST00000570510 CD99P14209 185 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 CHRNB2P17787 502 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 HCAR3P49019 387 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 KLK7P49862 253 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 RPL26P61254 145 aaKnown RBP10.78□□□□□ -0.68
VPS53-207ENST00000570510 ZBED6P86452 979 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 OTUD4Q01804 1114 aaKnown RBP10.78□□□□□ -0.68
VPS53-207ENST00000570510 PTP4A2Q12974 167 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 ABRQ12979 859 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 PRKD1Q15139 912 aaPredicted RBP10.78□□□□□ -0.68
VPS53-207ENST00000570510 ACAD10Q6JQN1 1059 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 XKRXQ6PP77 449 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 SPOCD1Q6ZMY3 1216 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 LUZP1Q86V48 1076 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 GLYATL1Q969I3 302 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 PTERQ96BW5 349 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 NAP1L5Q96NT1 182 aaPredicted RBP10.78□□□□□ -0.68
VPS53-207ENST00000570510 WDR24Q96S15 920 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 SLX1AQ9BQ83 275 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 ADGRE3Q9BY15 652 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 TSPY26PQ9H489 355 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 CWC15Q9P013 229 aaKnown RBP10.78□□□□□ -0.68
VPS53-207ENST00000570510 IFT80Q9P2H3 777 aaPredicted RBP10.78□□□□□ -0.68
VPS53-207ENST00000570510 LCMT1Q9UIC8 334 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 CAPN11Q9UMQ6 739 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 RPL26L1Q9UNX3 145 aaKnown RBP10.78□□□□□ -0.68
VPS53-207ENST00000570510 WDR37Q9Y2I8 494 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 CSAG2Q9Y5P2 127 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 ADGRG1Q9Y653 693 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 PIKFYVEQ9Y2I7 2098 aa10.78□□□□□ -0.68
VPS53-207ENST00000570510 PKDREJQ9NTG1 2253 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 MDC1Q14676 2089 aaKnown RBP10.77□□□□□ -0.69
VPS53-207ENST00000570510 SLC9B1P1A6NJY1 282 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 ZNF749O43361 778 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 KCNJ13O60928 360 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 PEX11BO96011 259 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 AMPD1P23109 780 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 SMSP52788 366 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 SOX8P57073 446 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 TLE4Q04727 773 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 RBPJQ06330 500 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 DPYSQ14117 519 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 NFKBIBQ15653 356 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 RPE65Q16518 533 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 PDPK2PQ6A1A2 396 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 FBXO38Q6PIJ6 1188 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 MON1BQ7L1V2 547 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 AMZ2Q86W34 360 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 PSTKQ8IV42 348 aaKnown RBP10.77□□□□□ -0.69
VPS53-207ENST00000570510 ZNF295-AS1Q8N0V1 137 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 OR1N1Q8NGS0 311 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 OR1L3Q8NH93 324 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 PCDHB18PQ96TA0 734 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 TDRD1Q9BXT4 1180 aaKnown RBP10.77□□□□□ -0.69
VPS53-207ENST00000570510 ZFYVE1Q9HBF4 777 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 BTRCQ9Y297 605 aa10.77□□□□□ -0.69
VPS53-207ENST00000570510 LUC7L2Q9Y383 392 aaKnown RBP10.77□□□□□ -0.69
VPS53-207ENST00000570510 CCDC66A2RUB6 948 aa10.76□□□□□ -0.69
VPS53-207ENST00000570510 GSAPA4D1B5 854 aa10.76□□□□□ -0.69
VPS53-207ENST00000570510 LRRC53A6NM62 1247 aa10.76□□□□□ -0.69
VPS53-207ENST00000570510 ANKRD66B4E2M5 251 aa10.76□□□□□ -0.69
VPS53-207ENST00000570510 AGPSO00116 658 aa10.76□□□□□ -0.69
VPS53-207ENST00000570510 MASP2O00187 686 aa10.76□□□□□ -0.69
VPS53-207ENST00000570510 FANCGO15287 622 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms