RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 TPP1O14773 563 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 YKT6O15498 198 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 SIGLEC6O43699 453 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 TCEA3O75764 348 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 ALDOAP04075 364 aaKnown RBP9.1□□□□□ -0.95
VPS35-211ENST00000569950 NUDT17P0C025 328 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 PMLP29590 882 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 GP5P40197 560 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 ACTR1BP42025 376 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 BLKP51451 505 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 ACTR1AP61163 376 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 UBE2IP63279 158 aaKnown RBP9.1□□□□□ -0.95
VPS35-211ENST00000569950 SLC14A1Q13336 389 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 NAB1Q13506 487 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 ZNF460Q14592 562 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 ELOCQ15369 112 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 C6orf132Q5T0Z8 1188 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 HECTD2Q5U5R9 776 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 AGAP9Q5VTM2 703 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 CYHR1Q6ZMK1 362 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 SH2D5Q6ZV89 423 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 SLC22A15Q8IZD6 547 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 IQCKQ8N0W5 287 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 SFRP1Q8N474 314 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 OTUD6BQ8N6M0 293 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 KYQ8NBH2 561 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 SIDT2Q8NBJ9 832 aaKnown RBP9.1□□□□□ -0.95
VPS35-211ENST00000569950 OR2W6PQ8NHA6 318 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 SLC37A2Q8TED4 501 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 DLG3Q92796 817 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 KCNJ9Q92806 393 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 ATXN7L3BQ96GX2 97 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 CAMK1GQ96NX5 476 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 INSM2Q96T92 566 aaPredicted RBP9.1□□□□□ -0.95
VPS35-211ENST00000569950 PAFAH2Q99487 392 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 GPR21Q99679 349 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 CAB39LQ9H9S4 337 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 PPANQ9NQ55 473 aaKnown RBP9.1□□□□□ -0.95
VPS35-211ENST00000569950 NLGN3Q9NZ94 848 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.1□□□□□ -0.95
VPS35-211ENST00000569950 CTNNAL1Q9UBT7 734 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 FETUBQ9UGM5 382 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 GNPTGQ9UJJ9 305 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 DHRS7Q9Y394 339 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 PTPRBP23467 1997 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 KIF26BQ2KJY2 2108 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 ADAMTS20P59510 1910 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 FAM95CA0A1B0GW59 222 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 OR52A4PA6NMU1 304 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 FOXO6A8MYZ6 492 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 H3BM21 787 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 FFAR2O15552 330 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 SH3BP5O60239 455 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 KCNJ13O60928 360 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 TRIM16O95361 564 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 ITGA2BP08514 1039 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 OR56A5P0C7T3 313 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 RALBP11234 206 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 F3P13726 295 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 RPL10P27635 214 aaKnown RBP9.09□□□□□ -0.95
VPS35-211ENST00000569950 PBLDP30039 288 aaPredicted RBP9.09□□□□□ -0.95
VPS35-211ENST00000569950 PLA2G5P39877 138 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 SLC19A1P41440 591 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 MAZP56270 477 aaKnown RBP9.09□□□□□ -0.95
VPS35-211ENST00000569950 ILF3Q12906 894 aaKnown RBP eCLIP9.09□□□□□ -0.95
VPS35-211ENST00000569950 DLG1Q12959 904 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 BMPR2Q13873 1038 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 GTF2H3Q13889 308 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 GRB7Q14451 532 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 INSCQ1MX18 579 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 UAP1L1Q3KQV9 507 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 AASDHQ4L235 1098 aaPredicted RBP9.09□□□□□ -0.95
VPS35-211ENST00000569950 ACSBG2Q5FVE4 666 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.09□□□□□ -0.95
VPS35-211ENST00000569950 DUS1LQ6P1R4 473 aaKnown RBP9.09□□□□□ -0.95
VPS35-211ENST00000569950 IYDQ6PHW0 289 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 LVRNQ6Q4G3 990 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 ADGRD1Q6QNK2 874 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 PAQR3Q6TCH7 311 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 ZNF438Q7Z4V0 828 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 TAF8Q7Z7C8 310 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 CMC1Q7Z7K0 106 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 CTAGE3PQ8IX95 158 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 CFAP206Q8IYR0 622 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 KIAA2013Q8IYS2 634 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 CYP4X1Q8N118 509 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 SDR16C5Q8N3Y7 309 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 EID2Q8N6I1 236 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 FAM181AQ8N9Y4 354 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 FAM46DQ8NEK8 389 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 ANKRD49Q8WVL7 239 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 HNRNPLLQ8WVV9 542 aaKnown RBP9.09□□□□□ -0.95
VPS35-211ENST00000569950 GLMNQ92990 594 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 APOLD1Q96LR9 279 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 MENTQ9BUN1 341 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 GSDMCQ9BYG8 508 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 WWP1Q9H0M0 922 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 TOR4AQ9NXH8 423 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 NSMCE4AQ9NXX6 385 aa9.09□□□□□ -0.95
VPS35-211ENST00000569950 KLHL42Q9P2K6 505 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms