RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ZNF534Q76KX8 674 aa2.58□□□□□ -2
VPS35-207ENST00000568191 ATG9AQ7Z3C6 839 aa2.58□□□□□ -2
VPS35-207ENST00000568191 ZNF554Q86TJ5 538 aa2.58□□□□□ -2
VPS35-207ENST00000568191 TSPAN33Q86UF1 283 aa2.58□□□□□ -2
VPS35-207ENST00000568191 TICAM1Q8IUC6 712 aa2.58□□□□□ -2
VPS35-207ENST00000568191 ARID3BQ8IVW6 561 aaPredicted RBP2.58□□□□□ -2
VPS35-207ENST00000568191 RAB42Q8N4Z0 105 aa2.58□□□□□ -2
VPS35-207ENST00000568191 L3MBTL4Q8NA19 623 aa2.58□□□□□ -2
VPS35-207ENST00000568191 EVI5LQ96CN4 794 aa2.58□□□□□ -2
VPS35-207ENST00000568191 MTERF3Q96E29 417 aa2.58□□□□□ -2
VPS35-207ENST00000568191 SLC47A1Q96FL8 570 aa2.58□□□□□ -2
VPS35-207ENST00000568191 WDFY2Q96P53 400 aa2.58□□□□□ -2
VPS35-207ENST00000568191 SEC62Q99442 399 aaKnown RBP2.58□□□□□ -2
VPS35-207ENST00000568191 FGFBP2Q9BYJ0 223 aa2.58□□□□□ -2
VPS35-207ENST00000568191 RAB6CQ9H0N0 254 aa2.58□□□□□ -2
VPS35-207ENST00000568191 DNAJB4Q9UDY4 337 aa2.58□□□□□ -2
VPS35-207ENST00000568191 PNMA2Q9UL42 364 aa2.58□□□□□ -2
VPS35-207ENST00000568191 IGHV4-61A0A0C4DH41 118 aa2.57□□□□□ -2
VPS35-207ENST00000568191 ELOVL7A1L3X0 281 aa2.57□□□□□ -2
VPS35-207ENST00000568191 KLF11O14901 512 aa2.57□□□□□ -2
VPS35-207ENST00000568191 PLPP2O43688 288 aa2.57□□□□□ -2
VPS35-207ENST00000568191 HS6ST1O60243 411 aa2.57□□□□□ -2
VPS35-207ENST00000568191 DDX58O95786 925 aaKnown RBP2.57□□□□□ -2
VPS35-207ENST00000568191 GH2P01242 217 aa2.57□□□□□ -2
VPS35-207ENST00000568191 IGHV4-59P01825 116 aa2.57□□□□□ -2
VPS35-207ENST00000568191 RAF1P04049 648 aa2.57□□□□□ -2
VPS35-207ENST00000568191 KRT9P35527 623 aa2.57□□□□□ -2
VPS35-207ENST00000568191 CSRP3P50461 194 aa2.57□□□□□ -2
VPS35-207ENST00000568191 KRTAP10-3P60369 221 aa2.57□□□□□ -2
VPS35-207ENST00000568191 RPS3AP61247 264 aaKnown RBP2.57□□□□□ -2
VPS35-207ENST00000568191 GCNT6Q5T4J0 391 aa2.57□□□□□ -2
VPS35-207ENST00000568191 WLSQ5T9L3 541 aa2.57□□□□□ -2
VPS35-207ENST00000568191 BHLHB9Q6PI77 547 aa2.57□□□□□ -2
VPS35-207ENST00000568191 NCEH1Q6PIU2 408 aa2.57□□□□□ -2
VPS35-207ENST00000568191 CLEC17AQ6ZS10 378 aa2.57□□□□□ -2
VPS35-207ENST00000568191 DENND5BQ6ZUT9 1274 aa2.57□□□□□ -2
VPS35-207ENST00000568191 NIPA2Q8N8Q9 360 aa2.57□□□□□ -2
VPS35-207ENST00000568191 TMEM178AQ8NBL3 297 aa2.57□□□□□ -2
VPS35-207ENST00000568191 RFFLQ8WZ73 363 aa2.57□□□□□ -2
VPS35-207ENST00000568191 HSD17B8Q92506 261 aa2.57□□□□□ -2
VPS35-207ENST00000568191 ZKSCAN4Q969J2 545 aaPredicted RBP2.57□□□□□ -2
VPS35-207ENST00000568191 DACH2Q96NX9 599 aa2.57□□□□□ -2
VPS35-207ENST00000568191 POLR1BQ9H9Y6 1135 aa2.57□□□□□ -2
VPS35-207ENST00000568191 PLCXD1Q9NUJ7 323 aa2.57□□□□□ -2
VPS35-207ENST00000568191 GTF2A1LQ9UNN4 478 aa2.57□□□□□ -2
VPS35-207ENST00000568191 B3GALT5Q9Y2C3 310 aa2.57□□□□□ -2
VPS35-207ENST00000568191 TMEM98Q9Y2Y6 226 aa2.57□□□□□ -2
VPS35-207ENST00000568191 TP53BP1Q12888 1972 aaPredicted RBP2.57□□□□□ -2
VPS35-207ENST00000568191 KIAA1210Q9ULL0 1709 aa2.56□□□□□ -2
VPS35-207ENST00000568191 OBSCNQ5VST9 7968 aa2.56□□□□□ -2
VPS35-207ENST00000568191 A0A087X002 238 aa2.56□□□□□ -2
VPS35-207ENST00000568191 TEX13DA0A0J9YY54 714 aaPredicted RBP2.56□□□□□ -2
VPS35-207ENST00000568191 A0A1B0GVC2 190 aa2.56□□□□□ -2
VPS35-207ENST00000568191 A0A1W2PQF6 199 aa2.56□□□□□ -2
VPS35-207ENST00000568191 A0A1W2PRB8 838 aa2.56□□□□□ -2
VPS35-207ENST00000568191 TMEM8BA6NDV4 472 aa2.56□□□□□ -2
VPS35-207ENST00000568191 KRTAP16-1A8MUX0 517 aa2.56□□□□□ -2
VPS35-207ENST00000568191 SLC22A2O15244 555 aa2.56□□□□□ -2
VPS35-207ENST00000568191 NDUFS4O43181 175 aa2.56□□□□□ -2
VPS35-207ENST00000568191 PRKRAO75569 313 aaKnown RBP2.56□□□□□ -2
VPS35-207ENST00000568191 WISP2O76076 250 aa2.56□□□□□ -2
VPS35-207ENST00000568191 TMEM63AO94886 807 aa2.56□□□□□ -2
VPS35-207ENST00000568191 RTN3O95197 1032 aaPredicted RBP2.56□□□□□ -2
VPS35-207ENST00000568191 PIGNO95427 931 aa2.56□□□□□ -2
VPS35-207ENST00000568191 CLEC3BP05452 202 aa2.56□□□□□ -2
VPS35-207ENST00000568191 SRPRAP08240 638 aaKnown RBP2.56□□□□□ -2
VPS35-207ENST00000568191 HOXC13P31276 330 aa2.56□□□□□ -2
VPS35-207ENST00000568191 PPARGP37231 505 aaPredicted RBP2.56□□□□□ -2
VPS35-207ENST00000568191 DSCR10P59022 87 aa2.56□□□□□ -2
VPS35-207ENST00000568191 HERV-K104P61576 105 aa2.56□□□□□ -2
VPS35-207ENST00000568191 SNRPEP62304 92 aaKnown RBP2.56□□□□□ -2
VPS35-207ENST00000568191 PRKCZQ05513 592 aa2.56□□□□□ -2
VPS35-207ENST00000568191 G3BP1Q13283 466 aaKnown RBP eCLIP2.56□□□□□ -2
VPS35-207ENST00000568191 HNRNPDQ14103 355 aaKnown RBP2.56□□□□□ -2
VPS35-207ENST00000568191 EIF4A2Q14240 407 aaKnown RBP2.56□□□□□ -2
VPS35-207ENST00000568191 CRYMQ14894 314 aa2.56□□□□□ -2
VPS35-207ENST00000568191 TBCEQ15813 527 aaPredicted RBP2.56□□□□□ -2
VPS35-207ENST00000568191 TSTQ16762 297 aaKnown RBP2.56□□□□□ -2
VPS35-207ENST00000568191 GORABQ5T7V8 394 aa2.56□□□□□ -2
VPS35-207ENST00000568191 BSPRYQ5W0U4 402 aa2.56□□□□□ -2
VPS35-207ENST00000568191 ZNF613Q6PF04 617 aa2.56□□□□□ -2
VPS35-207ENST00000568191 SLC16A9Q7RTY1 509 aa2.56□□□□□ -2
VPS35-207ENST00000568191 SCML4Q8N228 414 aa2.56□□□□□ -2
VPS35-207ENST00000568191 ZNRF4Q8WWF5 429 aa2.56□□□□□ -2
VPS35-207ENST00000568191 C1orf74Q96LT6 269 aa2.56□□□□□ -2
VPS35-207ENST00000568191 SGK494Q96LW2 274 aa2.56□□□□□ -2
VPS35-207ENST00000568191 MYADMQ96S97 322 aa2.56□□□□□ -2
VPS35-207ENST00000568191 CDK19Q9BWU1 502 aa2.56□□□□□ -2
VPS35-207ENST00000568191 ZNF71Q9NQZ8 489 aaPredicted RBP2.56□□□□□ -2
VPS35-207ENST00000568191 NENFQ9UMX5 172 aa2.56□□□□□ -2
VPS35-207ENST00000568191 MOB4Q9Y3A3 225 aa2.56□□□□□ -2
VPS35-207ENST00000568191 PYGO1Q9Y3Y4 419 aa2.56□□□□□ -2
VPS35-207ENST00000568191 SESN1Q9Y6P5 492 aa2.56□□□□□ -2
VPS35-207ENST00000568191 ZHX2Q9Y6X8 837 aa2.56□□□□□ -2
VPS35-207ENST00000568191 ARID4BQ4LE39 1312 aaPredicted RBP2.56□□□□□ -2
VPS35-207ENST00000568191 COL5A2P05997 1499 aaPredicted RBP2.56□□□□□ -2
VPS35-207ENST00000568191 IGLV9-49A0A0B4J1Y8 123 aa2.55□□□□□ -2
VPS35-207ENST00000568191 KPNA7A9QM74 516 aa2.55□□□□□ -2
VPS35-207ENST00000568191 MYO1GB0I1T2 1018 aa2.55□□□□□ -2
VPS35-207ENST00000568191 PALM2-AKAP2B1ALY0 433 aaPredicted RBP2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms