RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 EIF3IQ13347 325 aaKnown RBP13.2□□□□□ -0.3
CLK3-218ENST00000566926 NFATC2Q13469 925 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 SKIDA1Q1XH10 827 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 GPR33Q49SQ1 333 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 GPRC6AQ5T6X5 926 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 SNX20Q7Z614 316 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 TMEM135Q86UB9 458 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 TDRPQ86YL5 185 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 SFTPA2Q8IWL1 248 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 OR13C4Q8NGS5 318 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 WDR36Q8NI36 951 aaKnown RBP13.2□□□□□ -0.3
CLK3-218ENST00000566926 SLC37A2Q8TED4 501 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 PATE1Q8WXA2 126 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 TMEM159Q96B96 161 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 DCUN1D1Q96GG9 259 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 LIN37Q96GY3 246 aaPredicted RBP13.2□□□□□ -0.3
CLK3-218ENST00000566926 SLC38A3Q99624 504 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 KIFC1Q9BW19 673 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 SARS2Q9NP81 518 aaKnown RBP13.2□□□□□ -0.3
CLK3-218ENST00000566926 NLE1Q9NVX2 485 aaPredicted RBP13.2□□□□□ -0.3
CLK3-218ENST00000566926 SYBUQ9NX95 663 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 CRLS1Q9UJA2 301 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 TMPRSS11EQ9UL52 423 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 RIMKLBQ9ULI2 386 aa13.2□□□□□ -0.3
CLK3-218ENST00000566926 PCYT1BQ9Y5K3 369 aaPredicted RBP13.2□□□□□ -0.3
CLK3-218ENST00000566926 TCRBV9S1A1TA0A576 114 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 SRRM3A6NNA2 597 aaPredicted RBP13.19□□□□□ -0.3
CLK3-218ENST00000566926 AGAP14A8MT82 685 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 H7C0S8 307 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 GAPDHSO14556 408 aaPredicted RBP13.19□□□□□ -0.3
CLK3-218ENST00000566926 PPM1DO15297 605 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 DXOO77932 396 aaKnown RBP13.19□□□□□ -0.3
CLK3-218ENST00000566926 TPH1P17752 444 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 RBMS1P29558 406 aaKnown RBP13.19□□□□□ -0.3
CLK3-218ENST00000566926 CCKBRP32239 447 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 GPX6P59796 221 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 GABREP78334 506 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 TMPRSS15P98073 1019 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 XIAPP98170 497 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 SQSTM1Q13501 440 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 SEPT6Q14141 434 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 PTPRCAPQ14761 206 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 POU6F1Q14863 301 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 CRYMQ14894 314 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 PLA2G4EQ3MJ16 856 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 KRT71Q3SY84 523 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 KHDC1Q4VXA5 237 aaKnown RBP13.19□□□□□ -0.3
CLK3-218ENST00000566926 TMEM220Q6QAJ8 160 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 IGF2-ASQ6U949 168 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 WASH2PQ6VEQ5 465 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 UNC5AQ6ZN44 842 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 AMZ2Q86W34 360 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 TRIM48Q8IWZ4 208 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 PGM2Q96G03 612 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 CFAP36Q96G28 342 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 ATXN7L3BQ96GX2 97 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 AHCYL2Q96HN2 611 aaKnown RBP13.19□□□□□ -0.3
CLK3-218ENST00000566926 ZNF578Q96N58 590 aaPredicted RBP13.19□□□□□ -0.3
CLK3-218ENST00000566926 WDR83Q9BRX9 315 aaKnown RBP13.19□□□□□ -0.3
CLK3-218ENST00000566926 EPB41L1Q9H4G0 881 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 WASH6PQ9NQA3 447 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 NSMCE4AQ9NXX6 385 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 KCNK4Q9NYG8 393 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 AKAP7Q9P0M2 348 aaPredicted RBP13.19□□□□□ -0.3
CLK3-218ENST00000566926 TCAF1Q9Y4C2 921 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 KCTD3Q9Y597 815 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 PCDHGA8Q9Y5G5 932 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 IKBKGQ9Y6K9 419 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 RPS6KL1Q9Y6S9 549 aa13.19□□□□□ -0.3
CLK3-218ENST00000566926 TRBV23OR9-2A0A075B6M9 112 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 A6NCN8 305 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 PDZK1P1A8MUH7 402 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 HMGB1P1B2RPK0 211 aaPredicted RBP13.18□□□□□ -0.3
CLK3-218ENST00000566926 AGPSO00116 658 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 B4GAT1O43505 415 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 BRINP1O60477 761 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 BANF1O75531 89 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 POP7O75817 140 aaKnown RBP13.18□□□□□ -0.3
CLK3-218ENST00000566926 MPOP05164 745 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 XRCC1P18887 633 aaPredicted RBP13.18□□□□□ -0.3
CLK3-218ENST00000566926 SSTR1P30872 391 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 MC4RP32245 332 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 HALP42357 657 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 PPM1FP49593 454 aaPredicted RBP13.18□□□□□ -0.3
CLK3-218ENST00000566926 OR1D5P58170 312 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 ERVPABLB-1P60509 514 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 DMPKQ09013 629 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 AMZ1Q400G9 498 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 C3orf38Q5JPI3 329 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 HP1BP3Q5SSJ5 553 aaPredicted RBP13.18□□□□□ -0.3
CLK3-218ENST00000566926 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.18□□□□□ -0.3
CLK3-218ENST00000566926 AGBL2Q5U5Z8 902 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 AGAP9Q5VTM2 703 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 ABRAXAS1Q6UWZ7 409 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 TAOK1Q7L7X3 1001 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 LRRC6Q86X45 466 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 ZNF547Q8IVP9 402 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 IGDCC3Q8IVU1 814 aa13.18□□□□□ -0.3
CLK3-218ENST00000566926 AGGF1Q8N302 714 aaeCLIP13.18□□□□□ -0.3
CLK3-218ENST00000566926 NXPE1Q8N323 547 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms