RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TCRBV7S2A1N4TA0A589 114 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 UBA6A0AVT1 1052 aaPredicted RBP9.98□□□□□ -0.81
LDLR-214ENST00000560628 GOLGA6L9A6NEM1 432 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 DDX3YO15523 660 aaKnown RBP9.98□□□□□ -0.81
LDLR-214ENST00000560628 SUV39H1O43463 412 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 LDB2O43679 373 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 WISP1O95388 367 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 TIAF1O95411 115 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 SLC35G4P0C7Q5 338 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 CCNYL3P0C7X3 344 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 EBLN1P0CF75 366 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 PRSS56P0CW18 603 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 RALBP11234 206 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 FGF5P12034 268 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 ITGALP20701 1170 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 MC4RP32245 332 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 ARL4DP49703 201 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 ZNF140P52738 457 aaPredicted RBP9.98□□□□□ -0.81
LDLR-214ENST00000560628 MAP7Q14244 749 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 ERV3-1Q14264 604 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 PARP6Q2NL67 630 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 BCL7AQ4VC05 210 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 ZRANB3Q5FWF4 1079 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 DNTTIP2Q5QJE6 756 aaKnown RBP9.98□□□□□ -0.81
LDLR-214ENST00000560628 PWWP2BQ6NUJ5 590 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 ARMC6Q6NXE6 501 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 ATG14Q6ZNE5 492 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 ARHGEF18Q6ZSZ5 1173 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 TAS2R42Q7RTR8 314 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 PPP1R3BQ86XI6 285 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 NXPE1Q8N323 547 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 SPC24Q8NBT2 197 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 OR4E2Q8NGC2 313 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 UBXN4Q92575 508 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 SLC41A2Q96JW4 573 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 DNAJC1Q96KC8 554 aaKnown RBP9.98□□□□□ -0.81
LDLR-214ENST00000560628 PPM1MQ96MI6 270 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 COPS8Q99627 209 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 ADNPQ9H2P0 1102 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 ARNT2Q9HBZ2 717 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 PDE7BQ9NP56 450 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 ZNF71Q9NQZ8 489 aaPredicted RBP9.98□□□□□ -0.81
LDLR-214ENST00000560628 SLC24A2Q9UI40 661 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 PADI1Q9ULC6 663 aa9.98□□□□□ -0.81
LDLR-214ENST00000560628 CCDC78A2IDD5 438 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 OR5K3A6NET4 321 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 AGAP14A8MT82 685 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 NTRK1P04629 796 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 FURINP09958 794 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 ATP1B2P14415 290 aaPredicted RBP9.97□□□□□ -0.81
LDLR-214ENST00000560628 POLR2CP19387 275 aaPredicted RBP9.97□□□□□ -0.81
LDLR-214ENST00000560628 HADHAP40939 763 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 GDF10P55107 478 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 PDE1BQ01064 536 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 MC1RQ01726 317 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 KIF5AQ12840 1032 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 TUBB3Q13509 450 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 SEPT6Q14141 434 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 POU6F1Q14863 301 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 SKIDA1Q1XH10 827 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.97□□□□□ -0.81
LDLR-214ENST00000560628 KCTD11Q693B1 232 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 CAPRIN2Q6IMN6 1127 aaKnown RBP9.97□□□□□ -0.81
LDLR-214ENST00000560628 SNX20Q7Z614 316 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 TMEM135Q86UB9 458 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 SERPINA9Q86WD7 417 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 OOSP2Q86WS3 158 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 TMEM139Q8IV31 216 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 UBL4BQ8N7F7 174 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 TTC13Q8NBP0 860 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 PHC3Q8NDX5 983 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 APOBEC4Q8WW27 367 aaKnown RBP9.97□□□□□ -0.81
LDLR-214ENST00000560628 ULK4Q96C45 1275 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 LRRC45Q96CN5 670 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 LINC00615Q96LM1 132 aaPredicted RBP9.97□□□□□ -0.81
LDLR-214ENST00000560628 RMDN2Q96LZ7 410 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 PPP1R2P1Q96PQ5 205 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 FERD3LQ96RJ6 166 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 NRTNQ99748 197 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 TMEM121Q9BTD3 319 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 CLMPQ9H6B4 373 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 KIR3DX1Q9H7L2 352 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 AKIRIN1Q9H9L7 192 aaPredicted RBP9.97□□□□□ -0.81
LDLR-214ENST00000560628 ZDHHC3Q9NYG2 299 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 SEMA5BQ9P283 1151 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 RARRES3Q9UL19 164 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 PCDHB3Q9Y5E6 796 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 COLEC10Q9Y6Z7 277 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 CFAP46Q8IYW2 2715 aa9.97□□□□□ -0.81
LDLR-214ENST00000560628 PIPSLA2A3N6 862 aa9.96□□□□□ -0.82
LDLR-214ENST00000560628 TLCD2A6NGC4 264 aa9.96□□□□□ -0.82
LDLR-214ENST00000560628 CFAP99D6REC4 459 aa9.96□□□□□ -0.82
LDLR-214ENST00000560628 PDHA2P29803 388 aa9.96□□□□□ -0.82
LDLR-214ENST00000560628 PRLHRP49683 370 aa9.96□□□□□ -0.82
LDLR-214ENST00000560628 KPNA2P52292 529 aaKnown RBP9.96□□□□□ -0.82
LDLR-214ENST00000560628 HSD11B2P80365 405 aa9.96□□□□□ -0.82
LDLR-214ENST00000560628 ACY1Q03154 408 aa9.96□□□□□ -0.82
LDLR-214ENST00000560628 KLF1Q13351 362 aaPredicted RBP9.96□□□□□ -0.82
LDLR-214ENST00000560628 DNASE1L3Q13609 305 aa9.96□□□□□ -0.82
LDLR-214ENST00000560628 GPR19Q15760 415 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms