RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 FBXO36Q8NEA4 188 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 OR10G6Q8NH81 332 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 ASZ1Q8WWH4 475 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 ELMO1Q92556 727 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 TMEM159Q96B96 161 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 GFM1Q96RP9 751 aaKnown RBP12.73□□□□□ -0.37
NEDD8-208ENST00000560427 WDR83Q9BRX9 315 aaKnown RBP12.73□□□□□ -0.37
NEDD8-208ENST00000560427 SCNM1Q9BWG6 230 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 OR52A5Q9H2C5 316 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 L2HGDHQ9H9P8 463 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 FAM114A2Q9NRY5 505 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 KCNK4Q9NYG8 393 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 SCHIP1Q9P0W5 487 aaPredicted RBP12.73□□□□□ -0.37
NEDD8-208ENST00000560427 ZNF624Q9P2J8 865 aaPredicted RBP12.73□□□□□ -0.37
NEDD8-208ENST00000560427 RABGEF1Q9UJ41 708 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 FBXO5Q9UKT4 447 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 WDR37Q9Y2I8 494 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 MSRB2Q9Y3D2 182 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 COMMD10Q9Y6G5 202 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 NCOR2Q9Y618 2525 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 SPTBN2O15020 2390 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 IGHV1OR21-1A0A087WYE8 117 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 UBA6A0AVT1 1052 aaPredicted RBP12.72□□□□□ -0.37
NEDD8-208ENST00000560427 SLC5A10A0PJK1 596 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 OR52A4PA6NMU1 304 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 BHMG1C9JSJ3 638 aaPredicted RBP12.72□□□□□ -0.37
NEDD8-208ENST00000560427 D6RAR5 112 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 DUX1O43812 170 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 BANF1O75531 89 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 CPNE6O95741 557 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 S1PR4O95977 384 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 APOA4P06727 396 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 GSTA2P09210 222 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 JUPP14923 745 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 SLC19A1P41440 591 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 SLC1A2P43004 574 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 PLTPP55058 493 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 EIF3BP55884 814 aaKnown RBP12.72□□□□□ -0.37
NEDD8-208ENST00000560427 GUCY2DQ02846 1103 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 BOP1Q14137 746 aaKnown RBP12.72□□□□□ -0.37
NEDD8-208ENST00000560427 CLCA4Q14CN2 919 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 HSP90AA5PQ58FG0 334 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 CAPRIN2Q6IMN6 1127 aaKnown RBP12.72□□□□□ -0.37
NEDD8-208ENST00000560427 ZDHHC24Q6UX98 284 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 CCNI2Q6ZMN8 369 aaPredicted RBP12.72□□□□□ -0.37
NEDD8-208ENST00000560427 TMEM26Q6ZUK4 368 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 PDZD3Q86UT5 571 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 IGDCC3Q8IVU1 814 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 ZBED8Q8IZ13 594 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 GSDMBQ8TAX9 411 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 FBXO25Q8TCJ0 367 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 PYROXD1Q8WU10 500 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 NAT14Q8WUY8 206 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 C12orf66Q96MD2 445 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 PWWP2AQ96N64 755 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 BIRC8Q96P09 236 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 WWP1Q9H0M0 922 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 TSPYL1Q9H0U9 437 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 CCDC68Q9H2F9 335 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 SLC40A1Q9NP59 571 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 IL1RAPL1Q9NZN1 696 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 COLEC10Q9Y6Z7 277 aa12.72□□□□□ -0.37
NEDD8-208ENST00000560427 ARHGEF17Q96PE2 2063 aaPredicted RBP12.71□□□□□ -0.37
NEDD8-208ENST00000560427 TRBV23OR9-2A0A075B6M9 112 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 A0A1W2PQM1 296 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 GPC4O75487 556 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 PKMP14618 531 aaKnown RBP12.71□□□□□ -0.37
NEDD8-208ENST00000560427 ALDH4A1P30038 563 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 CCKBRP32239 447 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 CCR7P32248 378 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 LEPRP48357 1165 aaKnown RBP12.71□□□□□ -0.37
NEDD8-208ENST00000560427 OR1D5P58170 312 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 CCL7P80098 99 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 SLC7A5Q01650 507 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 MAP9Q49MG5 647 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 CTSL3PQ5NE16 218 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 PLEKHS1Q5SXH7 462 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 KLHL35Q6PF15 583 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 CYS1Q717R9 158 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 OTOAQ7RTW8 1153 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 DENND6AQ8IWF6 608 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 SLC22A15Q8IZD6 547 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 Q8N9G6 341 aaPredicted RBP12.71□□□□□ -0.37
NEDD8-208ENST00000560427 C2CD4AQ8NCU7 369 aaPredicted RBP12.71□□□□□ -0.37
NEDD8-208ENST00000560427 KCNJ9Q92806 393 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 CFAP36Q96G28 342 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 AHCYL2Q96HN2 611 aaKnown RBP12.71□□□□□ -0.37
NEDD8-208ENST00000560427 RMDN2Q96LZ7 410 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 TMEM74Q96NL1 305 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 MVB12BQ9H7P6 319 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 SYNDIG1Q9H7V2 258 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 PLAC1Q9HBJ0 212 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 SAYSD1Q9NPB0 183 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 IARS2Q9NSE4 1012 aaKnown RBP12.71□□□□□ -0.37
NEDD8-208ENST00000560427 IMP3Q9NV31 184 aaKnown RBP12.71□□□□□ -0.37
NEDD8-208ENST00000560427 KLHL42Q9P2K6 505 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 FAM8A1Q9UBU6 413 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 MTRF1LQ9UGC7 380 aaKnown RBP12.71□□□□□ -0.37
NEDD8-208ENST00000560427 KLK13Q9UKR3 277 aa12.71□□□□□ -0.37
NEDD8-208ENST00000560427 CORO1CQ9ULV4 474 aaPredicted RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms