RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	SERPINH1	P50454	418 aa	Known RBP	4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	MAZ	P56270	477 aa	Known RBP	4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	KIAA1024L	P59773	190 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	YWHAE	P62258	255 aa	Known RBP	4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	CDK17	Q00537	523 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	BIRC2	Q13490	618 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	MTM1	Q13496	603 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	IL11RA	Q14626	422 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	CHRNA6	Q15825	494 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	NFIL3	Q16649	462 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	UGT8	Q16880	541 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	SMTNL2	Q2TAL5	461 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	LARP4	Q71RC2	724 aa	Known RBP eCLIP	4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	TMEM110	Q86TL2	294 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	ZNF575	Q86XF7	245 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	NRROS	Q86YC3	692 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	ZNF683	Q8IZ20	524 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	IQCK	Q8N0W5	287 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	PDILT	Q8N807	584 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	IQUB	Q8NA54	791 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	ST6GALNAC3	Q8NDV1	305 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	FBXL13	Q8NEE6	735 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	CCL4L1	Q8NHW4	92 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	TFAP2B	Q92481	460 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	AHCYL2	Q96HN2	611 aa	Known RBP	4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	C1orf74	Q96LT6	269 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	SMAD5	Q99717	465 aa	Known RBP	4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	GSDMC	Q9BYG8	508 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	ULBP3	Q9BZM4	244 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	MIS12	Q9H081	205 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	THAP9	Q9H5L6	903 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	APMAP	Q9HDC9	416 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	ACSS2	Q9NR19	701 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	CATSPERZ	Q9NTU4	200 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	TMEM51	Q9NW97	253 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	TRNAU1AP	Q9NX07	287 aa	Known RBP	4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	TMEM9	Q9P0T7	183 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	C5AR2	Q9P296	337 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	COPG2	Q9UBF2	871 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	VANGL2	Q9ULK5	521 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	TRAF3IP3	Q9Y228	551 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	ITM2B	Q9Y287	266 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	B3GNT3	Q9Y2A9	372 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	MFHAS1	Q9Y4C4	1052 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	TRAF6	Q9Y4K3	522 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	HS3ST4	Q9Y661	456 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	COPG1	Q9Y678	874 aa	Known RBP	4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	STAB1	Q9NY15	2570 aa		4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	ZNF469	Q96JG9	3925 aa	Predicted RBP	4.68	□□□□□ -1.66
SCFD1-223	ENST00000557076	PRRC2A	P48634	2157 aa	Known RBP	4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	IGLV3-10	A0A075B6K4	115 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076		A0A0G2JNJ9	132 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076		A0A1B0GUH1	482 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076		A6NCN8	305 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	GOLGA6L3	A6NEY3	463 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	PRAMEF25	A6NGN4	478 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076		A8MU76	341 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	CACNB4	O00305	520 aa	Predicted RBP	4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	KLF4	O43474	513 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	RHOBTB3	O94955	611 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	GSR	P00390	522 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	MT-ND3	P03897	115 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	AMY2A	P04746	511 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	UGT2B4	P06133	528 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	RHOC	P08134	193 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	STS	P08842	583 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	KRT13	P13646	458 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	CD99	P14209	185 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	AMY2B	P19961	511 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	OR1E1	P30953	314 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	GK	P32189	559 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	GARS	P41250	739 aa	Known RBP	4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	FASLG	P48023	281 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	SNRPD1	P62314	119 aa	Known RBP	4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	ELP6	Q0PNE2	266 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	ILF3	Q12906	894 aa	Known RBP eCLIP	4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	STK4	Q13043	487 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	CUL2	Q13617	745 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	ZNF235	Q14590	738 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	GRM7	Q14831	915 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	SLC39A14	Q15043	492 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	PCOLCE	Q15113	449 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	ZNF630	Q2M218	657 aa	Predicted RBP	4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	ALF	Q53S48	1182 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	YOD1	Q5VVQ6	348 aa	Predicted RBP	4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	TMEM200B	Q69YZ2	307 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	ANKRD40	Q6AI12	368 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	IGFL3	Q6UXB1	125 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	GDPD4	Q6W3E5	623 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	LDLRAD3	Q86YD5	345 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	SCUBE1	Q8IWY4	988 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	NAGS	Q8N159	534 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	OR10G6	Q8NH81	332 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	UBE2Q2	Q8WVN8	375 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	FUBP1	Q96AE4	644 aa	Known RBP	4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	HMCES	Q96FZ2	354 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	PDXP	Q96GD0	296 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	KLHL32	Q96NJ5	620 aa		4.67	□□□□□ -1.66
SCFD1-223	ENST00000557076	AGAP3	Q96P47	875 aa		4.67	□□□□□ -1.66

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms