RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 MAK16Q9BXY0 300 aaKnown RBP12.33□□□□□ -0.44
SHMT2-223ENST00000556689 SLC7A5P2Q9GIP4 190 aa12.33□□□□□ -0.44
SHMT2-223ENST00000556689 GLOD4Q9HC38 313 aa12.33□□□□□ -0.44
SHMT2-223ENST00000556689 SYTL2Q9HCH5 934 aa12.33□□□□□ -0.44
SHMT2-223ENST00000556689 C1GALT1Q9NS00 363 aa12.33□□□□□ -0.44
SHMT2-223ENST00000556689 SLC24A2Q9UI40 661 aa12.33□□□□□ -0.44
SHMT2-223ENST00000556689 SERTAD3Q9UJW9 196 aa12.33□□□□□ -0.44
SHMT2-223ENST00000556689 ACSL5Q9ULC5 683 aa12.33□□□□□ -0.44
SHMT2-223ENST00000556689 B3GNT3Q9Y2A9 372 aa12.33□□□□□ -0.44
SHMT2-223ENST00000556689 COLEC10Q9Y6Z7 277 aa12.33□□□□□ -0.44
SHMT2-223ENST00000556689 ZNF106Q9H2Y7 1883 aaKnown RBP12.33□□□□□ -0.44
SHMT2-223ENST00000556689 SHANK1Q9Y566 2161 aa12.33□□□□□ -0.44
SHMT2-223ENST00000556689 ITPR2Q14571 2701 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 A0A1B0GTH6 734 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 ANKUB1A6NFN9 424 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 SLC9B1P1A6NJY1 282 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 OR2AG2A6NM03 316 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 PPP1R12AO14974 1030 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-223ENST00000556689 DDX3YO15523 660 aaKnown RBP12.32□□□□□ -0.44
SHMT2-223ENST00000556689 MAP3K7O43318 606 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 LCA5LO95447 670 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 POLR2CP19387 275 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-223ENST00000556689 CYP2A7P20853 494 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 CDH3P22223 829 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 SPAM1P38567 509 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 ARCN1P48444 511 aaKnown RBP12.32□□□□□ -0.44
SHMT2-223ENST00000556689 ABRQ12979 859 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 PRKAA1Q13131 559 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 KRT33BQ14525 404 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 NR1I3Q14994 352 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 KYNUQ16719 465 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 LONRF2Q1L5Z9 754 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 TEX44Q53QW1 395 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 FAM151BQ6UXP7 276 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 RAB43Q86YS6 212 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 SRRM1Q8IYB3 904 aaKnown RBP12.32□□□□□ -0.44
SHMT2-223ENST00000556689 SYTL1Q8IYJ3 562 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 SLC34A3Q8N130 599 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 PLD5Q8N7P1 536 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 DDHD1Q8NEL9 900 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 OR4E2Q8NGC2 313 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-223ENST00000556689 FER1L6-AS2Q96M78 137 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 PPM1MQ96MI6 270 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 RANBP9Q96S59 729 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 BPIFA3Q9BQP9 254 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 WWP1Q9H0M0 922 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 KIR3DX1Q9H7L2 352 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 ACTR5Q9H9F9 607 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-223ENST00000556689 PCMTD2Q9NV79 361 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 UBP1Q9NZI7 540 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 IL17CQ9P0M4 197 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 CTTNBP2NLQ9P2B4 639 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 COPG1Q9Y678 874 aaKnown RBP12.32□□□□□ -0.44
SHMT2-223ENST00000556689 MED13Q9UHV7 2174 aa12.32□□□□□ -0.44
SHMT2-223ENST00000556689 PRRC2CQ9Y520 2896 aaKnown RBP12.31□□□□□ -0.44
SHMT2-223ENST00000556689 A0A0A6YYK5 440 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-223ENST00000556689 GLYATL1P3A0A0U1RQE8 302 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 LOC285095A0A1B0GVY8 99 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 KLHL33A6NCF5 533 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 MGAT4DA6NG13 374 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 ZNF487B1APH4 448 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 TMEM150CB9EJG8 249 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 F5H423 210 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-223ENST00000556689 APOL1O14791 398 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 KLHL41O60662 606 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 EPOP01588 193 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 MSL3P1P0C860 447 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 ZFXP17010 805 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-223ENST00000556689 MSH3P20585 1137 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 AGXTP21549 392 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 NDUFS1P28331 727 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 TNFRSF8P28908 595 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 TNNT3P45378 269 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-223ENST00000556689 PREPP48147 710 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 ATP1A4Q13733 1029 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 ITGA9Q13797 1035 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 GSE1Q14687 1217 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 SSPNQ14714 243 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 NCF4Q15080 339 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 FNBP1LQ5T0N5 605 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 GPRC6AQ5T6X5 926 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 C1QL3Q5VWW1 255 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 LYPLAL1Q5VWZ2 237 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 SLC9A4Q6AI14 798 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 DUS1LQ6P1R4 473 aaKnown RBP12.31□□□□□ -0.44
SHMT2-223ENST00000556689 FAM198BQ6UWH4 519 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 SPDYE1Q8NFV5 336 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-223ENST00000556689 OR2L2Q8NH16 312 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 OR1L3Q8NH93 324 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 IP6K3Q96PC2 410 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 DPH2Q9BQC3 489 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-223ENST00000556689 UVRAGQ9P2Y5 699 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 FAM153AQ9UHL3 310 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 LCMT1Q9UIC8 334 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 PADI2Q9Y2J8 665 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 PKP3Q9Y446 797 aa12.31□□□□□ -0.44
SHMT2-223ENST00000556689 LRRD1A4D1F6 860 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 C9J4A7 227 aa12.3□□□□□ -0.44
SHMT2-223ENST00000556689 MATN2O00339 956 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms