RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 MATN4O95460 622 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 LINC00032P0C843 101 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 PSMA4P25789 261 aaKnown RBP16.92■□□□□ 0.3
SPIDR-227ENST00000541342 HLA-FP30511 346 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 PFKFB4Q16877 469 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 PYCR3Q53H96 274 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 RABL3Q5HYI8 236 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 ZNF697Q5TEC3 545 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 BLOC1S3Q6QNY0 202 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 TMEM125Q96AQ2 219 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 EID2BQ96D98 161 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 MCOLN1Q9GZU1 580 aa16.92■□□□□ 0.3
SPIDR-227ENST00000541342 SOX17Q9H6I2 414 aaPredicted RBP16.92■□□□□ 0.3
SPIDR-227ENST00000541342 EVLQ9UI08 416 aaPredicted RBP16.92■□□□□ 0.3
SPIDR-227ENST00000541342 ZNF701M0R085 212 aaPredicted RBP16.91■□□□□ 0.3
SPIDR-227ENST00000541342 ANGPT2O15123 496 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 OGNP20774 298 aaKnown RBP16.91■□□□□ 0.3
SPIDR-227ENST00000541342 LPOP22079 712 aaPredicted RBP16.91■□□□□ 0.3
SPIDR-227ENST00000541342 FASP25445 335 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 BNIP2Q12982 314 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 CYBRD1Q53TN4 286 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 ASTLQ6HA08 431 aaPredicted RBP16.91■□□□□ 0.3
SPIDR-227ENST00000541342 FAM109BQ6ICB4 259 aaPredicted RBP16.91■□□□□ 0.3
SPIDR-227ENST00000541342 RYBPQ8N488 228 aaPredicted RBP16.91■□□□□ 0.3
SPIDR-227ENST00000541342 VOPP1Q96AW1 172 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 ATOH8Q96SQ7 321 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 ABCB8Q9NUT2 735 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 IKZF3Q9UKT9 509 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 H3BMQ9 156 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 PER2O15055 1255 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 ZNF37AP17032 561 aaPredicted RBP16.91■□□□□ 0.3
SPIDR-227ENST00000541342 ECT2LQ008S8 904 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 UBE3AQ05086 875 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 INPP5AQ14642 412 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 DGKKQ5KSL6 1271 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 PRMT9Q6P2P2 845 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 TNIP2Q8NFZ5 429 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 VPS33AQ96AX1 596 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 ZSWIM3Q96MP5 696 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 COG8Q96MW5 612 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 DOK1Q99704 481 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 TNKS2Q9H2K2 1166 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 FKBPLQ9UIM3 349 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 USP22Q9UPT9 525 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 OAS3Q9Y6K5 1087 aaKnown RBP16.91■□□□□ 0.3
SPIDR-227ENST00000541342 STAMBPO95630 424 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 HGFP14210 728 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 NCK1P16333 377 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 CTPS1P17812 591 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 STK19P49842 368 aaPredicted RBP16.91■□□□□ 0.3
SPIDR-227ENST00000541342 AP1S1P61966 158 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 FBXO48Q5FWF7 155 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 PRSS36Q5K4E3 855 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 AFTPHQ6ULP2 937 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 DDIASQ8IXT1 998 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 TRPV3Q8NET8 790 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 PIH1D2Q8WWB5 315 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 RPF2Q9H7B2 306 aaKnown RBP16.91■□□□□ 0.3
SPIDR-227ENST00000541342 SLAMF8Q9P0V8 285 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 GPR45Q9Y5Y3 372 aa16.91■□□□□ 0.3
SPIDR-227ENST00000541342 SH3PXD2BA1X283 911 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 PGLSO95336 258 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 ALPIP09923 528 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 CD247P20963 164 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 NUP107P57740 925 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 GOLM1Q8NBJ4 401 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 CYGBQ8WWM9 190 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 NAA50Q9GZZ1 169 aaKnown RBP16.9■□□□□ 0.3
SPIDR-227ENST00000541342 CXorf21Q9HAI6 301 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 TDP1Q9NUW8 608 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 RWDD3Q9Y3V2 267 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 ATG2AQ2TAZ0 1938 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 RNF103-CHMP3A0A140T963 221 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 DDX6P26196 483 aaKnown RBP eCLIP16.9■□□□□ 0.3
SPIDR-227ENST00000541342 SOX11P35716 441 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 GSK3BP49841 420 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 SUOXP51687 545 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 RAB39AQ14964 217 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 FUT11Q495W5 492 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 PSAPL1Q6NUJ1 521 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 PIANPQ8IYJ0 282 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 TUBGCP3Q96CW5 907 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 MYO19Q96H55 970 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 C9orf16Q9BUW7 83 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 TRIM15Q9C019 465 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 LINC00597Q9H2U6 94 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 SCN8AQ9UQD0 1980 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 CYBBP04839 570 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 IL10P22301 178 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 CYP51A1Q16850 503 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 PAGE3Q5JUK9 113 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 Q6ZNX1 250 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 GRASPQ7Z6J2 395 aaPredicted RBP16.9■□□□□ 0.3
SPIDR-227ENST00000541342 KIAA2013Q8IYS2 634 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 DNAJB14Q8TBM8 379 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 GFM2Q969S9 779 aaKnown RBP16.9■□□□□ 0.3
SPIDR-227ENST00000541342 TDRKHQ9Y2W6 561 aaKnown RBP16.9■□□□□ 0.3
SPIDR-227ENST00000541342 MED16Q9Y2X0 877 aa16.9■□□□□ 0.3
SPIDR-227ENST00000541342 H0Y858 1186 aa16.89■□□□□ 0.29
SPIDR-227ENST00000541342 INPP4BO15327 924 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms