RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 CPQQ9Y646 472 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 BTN3A1O00481 513 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 STX7O15400 261 aaKnown RBP12.34□□□□□ -0.43
RNF4-222ENST00000541204 SNX2O60749 519 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 EFEMP2O95967 443 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 URODP06132 367 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 RPS17P08708 135 aaKnown RBP12.34□□□□□ -0.43
RNF4-222ENST00000541204 HOXB8P17481 243 aaPredicted RBP12.34□□□□□ -0.43
RNF4-222ENST00000541204 BNIP3Q12983 259 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 TAF1AQ15573 450 aaPredicted RBP12.34□□□□□ -0.43
RNF4-222ENST00000541204 SPATS1Q496A3 300 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 AASDHQ4L235 1098 aaPredicted RBP12.34□□□□□ -0.43
RNF4-222ENST00000541204 ALG1LQ6GMV1 187 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 SLC2A7Q6PXP3 512 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 USP51Q70EK9 711 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 TBC1D15Q8TC07 691 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 GIPC3Q8TF64 312 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 TSPEARQ8WU66 669 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 MUS81Q96NY9 551 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 FEM1AQ9BSK4 669 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 HGH1Q9BTY7 390 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 SMG9Q9H0W8 520 aaKnown RBP12.34□□□□□ -0.43
RNF4-222ENST00000541204 MUC13Q9H3R2 512 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 C8orf4Q9NR00 106 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 TAS2R13Q9NYV9 303 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 IFT80Q9P2H3 777 aaPredicted RBP12.34□□□□□ -0.43
RNF4-222ENST00000541204 ZNF510Q9Y2H8 683 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 ASB1Q9Y576 335 aa12.34□□□□□ -0.43
RNF4-222ENST00000541204 ESRRBO95718 433 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 ACRP10323 421 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 UMPSP11172 480 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 OGNP20774 298 aaKnown RBP12.33□□□□□ -0.44
RNF4-222ENST00000541204 LPOP22079 712 aaPredicted RBP12.33□□□□□ -0.44
RNF4-222ENST00000541204 EEF1B2P24534 225 aaKnown RBP12.33□□□□□ -0.44
RNF4-222ENST00000541204 ADARB1P78563 741 aaKnown RBP12.33□□□□□ -0.44
RNF4-222ENST00000541204 RAD51Q06609 339 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 TYSND1Q2T9J0 566 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 XKR7Q5GH72 579 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 AFTPHQ6ULP2 937 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 RNF168Q8IYW5 571 aaPredicted RBP12.33□□□□□ -0.44
RNF4-222ENST00000541204 APCDD1Q8J025 514 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 FNDC5Q8NAU1 212 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 NUDT8Q8WV74 236 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 OVCA2Q8WZ82 227 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 VWCEQ96DN2 955 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 CCDC97Q96F63 343 aaPredicted RBP12.33□□□□□ -0.44
RNF4-222ENST00000541204 CDK15Q96Q40 435 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 ADGRE3Q9BY15 652 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 VPS51Q9UID3 782 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 INSL5Q9Y5Q6 135 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 MAGED1Q9Y5V3 778 aaPredicted RBP12.33□□□□□ -0.44
RNF4-222ENST00000541204 KANSL1LA0AUZ9 987 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 LCHNA4D1U4 455 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 H0Y858 1186 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 SMAD6O43541 496 aaKnown RBP12.33□□□□□ -0.44
RNF4-222ENST00000541204 CHEK2O96017 543 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 F11P03951 625 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 CKMP06732 381 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 UROSP10746 265 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 PCNAP12004 261 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 MATN1P21941 496 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 TTKP33981 857 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 EPHB3P54753 998 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 EEFSECP57772 596 aaKnown RBP12.33□□□□□ -0.44
RNF4-222ENST00000541204 NAA20P61599 178 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 MTA1Q13330 715 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 CCNYL2Q5T2Q4 361 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 GLYATQ6IB77 296 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 ITIH5Q86UX2 942 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 PROKR1Q8TCW9 393 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 BRINP2Q9C0B6 783 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 TLR9Q9NR96 1032 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 SUN2Q9UH99 717 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 ZNF639Q9UID6 485 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 PCTPQ9UKL6 214 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 CLEC4EQ9ULY5 219 aa12.33□□□□□ -0.44
RNF4-222ENST00000541204 TEX28O15482 410 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 ALBP02768 609 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 ZNF182P17025 639 aaPredicted RBP12.32□□□□□ -0.44
RNF4-222ENST00000541204 ITGB6P18564 788 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 HLCSP50747 726 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 PLA2G4EQ3MJ16 856 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 CHST9Q7L1S5 443 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 HOMEZQ8IX15 550 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 SLC39A11Q8N1S5 342 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 CDYL2Q8N8U2 506 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 OSCP1Q8WVF1 389 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 TANKQ92844 425 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 HBEGFQ99075 208 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 BDH2Q9BUT1 245 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 ZNF711Q9Y462 761 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 SYCE1LA8MT33 242 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 NRG2O14511 850 aaPredicted RBP12.32□□□□□ -0.44
RNF4-222ENST00000541204 ZSCAN9O15535 394 aaPredicted RBP12.32□□□□□ -0.44
RNF4-222ENST00000541204 SYNCRIPO60506 623 aaKnown RBP12.32□□□□□ -0.44
RNF4-222ENST00000541204 OR4F21O95013 312 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 CSF2RAP15509 400 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 ITGB8P26012 769 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 GABRR2P28476 465 aa12.32□□□□□ -0.44
RNF4-222ENST00000541204 HTR1EP28566 365 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms