RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 KLHL3Q9UH77 587 aa20.16■□□□□ 0.82
VPS28-206ENST00000526734 B3GALT1Q9Y5Z6 326 aa20.16■□□□□ 0.82
VPS28-206ENST00000526734 CACNA1GO43497 2377 aa20.16■□□□□ 0.82
VPS28-206ENST00000526734 CELSR3Q9NYQ7 3312 aa20.16■□□□□ 0.82
VPS28-206ENST00000526734 AHCTF1Q8WYP5 2266 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 ERVH48-1M5A8F1 160 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 ATXN7O15265 892 aaPredicted RBP20.15■□□□□ 0.82
VPS28-206ENST00000526734 ETS1P14921 441 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 FOXN2P32314 431 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 CD151P48509 253 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 SOWAHCQ53LP3 525 aaPredicted RBP20.15■□□□□ 0.82
VPS28-206ENST00000526734 MANEAQ5SRI9 462 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 ARHGAP40Q5TG30 622 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 ARMC3Q5W041 872 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 CAPRIN2Q6IMN6 1127 aaKnown RBP20.15■□□□□ 0.82
VPS28-206ENST00000526734 PIANPQ8IYJ0 282 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 CFAP206Q8IYR0 622 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 CARFQ8N187 725 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 RASGEF1CQ8N431 466 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 GLIS1Q8NBF1 620 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 OR13J1Q8NGT2 312 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 UBXN4Q92575 508 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 ANP32BQ92688 251 aaKnown RBP20.15■□□□□ 0.82
VPS28-206ENST00000526734 WBP1Q96G27 269 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 INSM2Q96T92 566 aaPredicted RBP20.15■□□□□ 0.82
VPS28-206ENST00000526734 COG4Q9H9E3 785 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 SIDT1Q9NXL6 827 aaKnown RBP20.15■□□□□ 0.82
VPS28-206ENST00000526734 TCAF1Q9Y4C2 921 aa20.15■□□□□ 0.82
VPS28-206ENST00000526734 IFRD1O00458 451 aaPredicted RBP20.14■□□□□ 0.81
VPS28-206ENST00000526734 RASSF9O75901 435 aa20.14■□□□□ 0.81
VPS28-206ENST00000526734 FTH1P02794 183 aa20.14■□□□□ 0.81
VPS28-206ENST00000526734 CDKN1CP49918 316 aaPredicted RBP20.14■□□□□ 0.81
VPS28-206ENST00000526734 ARSDP51689 593 aa20.14■□□□□ 0.81
VPS28-206ENST00000526734 BASP1P80723 227 aaKnown RBP20.14■□□□□ 0.81
VPS28-206ENST00000526734 PLOD1Q02809 727 aaPredicted RBP20.14■□□□□ 0.81
VPS28-206ENST00000526734 GSE1Q14687 1217 aa20.14■□□□□ 0.81
VPS28-206ENST00000526734 CCDC38Q502W7 563 aa20.14■□□□□ 0.81
VPS28-206ENST00000526734 AARS2Q5JTZ9 985 aaKnown RBP20.14■□□□□ 0.81
VPS28-206ENST00000526734 PCID2Q5JVF3 399 aa20.14■□□□□ 0.81
VPS28-206ENST00000526734 ANKS6Q68DC2 871 aa20.14■□□□□ 0.81
VPS28-206ENST00000526734 OOSP2Q86WS3 158 aa20.14■□□□□ 0.81
VPS28-206ENST00000526734 RMDN2Q96LZ7 410 aa20.14■□□□□ 0.81
VPS28-206ENST00000526734 IL22Q9GZX6 179 aa20.14■□□□□ 0.81
VPS28-206ENST00000526734 SMARCAL1Q9NZC9 954 aa20.14■□□□□ 0.81
VPS28-206ENST00000526734 SEMA5BQ9P283 1151 aa20.14■□□□□ 0.81
VPS28-206ENST00000526734 TTC7AQ9ULT0 858 aaPredicted RBP20.14■□□□□ 0.81
VPS28-206ENST00000526734 LAMA5O15230 3695 aa20.14■□□□□ 0.81
VPS28-206ENST00000526734 CCDC162PA2VCL2 907 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 EIF4E1BA6NMX2 242 aaKnown RBP20.13■□□□□ 0.81
VPS28-206ENST00000526734 MATN2O00339 956 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 LIN7AO14910 233 aaPredicted RBP20.13■□□□□ 0.81
VPS28-206ENST00000526734 POLR1CO15160 346 aaPredicted RBP20.13■□□□□ 0.81
VPS28-206ENST00000526734 POLBP06746 335 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 ZSCAN5DPP0CG00 497 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 TPSB2P20231 275 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 CXCR5P32302 372 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 GRIA1P42261 906 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 NPY2RP49146 381 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 PRAMEP78395 509 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 KRT33BQ14525 404 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 TGIF1Q15583 401 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 TPSAB1Q15661 275 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 ZNF658BQ4V348 819 aaPredicted RBP20.13■□□□□ 0.81
VPS28-206ENST00000526734 CACHD1Q5VU97 1274 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 IRGCQ6NXR0 463 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 XKR5Q6UX68 686 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 PRUNE1Q86TP1 453 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 KMT5CQ86Y97 462 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 PRELID2Q8N945 189 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 ZSCAN1Q8NBB4 408 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 KLHL6Q8WZ60 621 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 HDAC10Q969S8 669 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 TRIT1Q9H3H1 467 aaKnown RBP20.13■□□□□ 0.81
VPS28-206ENST00000526734 BFARQ9NZS9 450 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 FAM8A1Q9UBU6 413 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 SLC24A2Q9UI40 661 aa20.13■□□□□ 0.81
VPS28-206ENST00000526734 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP20.12■□□□□ 0.81
VPS28-206ENST00000526734 CCDC78A2IDD5 438 aa20.12■□□□□ 0.81
VPS28-206ENST00000526734 OR5K3A6NET4 321 aa20.12■□□□□ 0.81
VPS28-206ENST00000526734 GOT2P00505 430 aaKnown RBP20.12■□□□□ 0.81
VPS28-206ENST00000526734 OR56A5P0C7T3 313 aa20.12■□□□□ 0.81
VPS28-206ENST00000526734 LEPRP48357 1165 aaKnown RBP20.12■□□□□ 0.81
VPS28-206ENST00000526734 SARNPP82979 210 aaKnown RBP20.12■□□□□ 0.81
VPS28-206ENST00000526734 IL11RAQ14626 422 aa20.12■□□□□ 0.81
VPS28-206ENST00000526734 ARMC6Q6NXE6 501 aa20.12■□□□□ 0.81
VPS28-206ENST00000526734 ACVR1CQ8NER5 493 aa20.12■□□□□ 0.81
VPS28-206ENST00000526734 OR4L1Q8NH43 312 aa20.12■□□□□ 0.81
VPS28-206ENST00000526734 TSSK1BQ9BXA7 367 aa20.12■□□□□ 0.81
VPS28-206ENST00000526734 OR52A5Q9H2C5 316 aa20.12■□□□□ 0.81
VPS28-206ENST00000526734 MVB12BQ9H7P6 319 aa20.12■□□□□ 0.81
VPS28-206ENST00000526734 WDR70Q9NW82 654 aa20.12■□□□□ 0.81
VPS28-206ENST00000526734 CFAP20Q9Y6A4 193 aaKnown RBP20.12■□□□□ 0.81
VPS28-206ENST00000526734 TLCD2A6NGC4 264 aa20.11■□□□□ 0.81
VPS28-206ENST00000526734 PGRMC1O00264 195 aaKnown RBP20.11■□□□□ 0.81
VPS28-206ENST00000526734 PRSS56P0CW18 603 aa20.11■□□□□ 0.81
VPS28-206ENST00000526734 KCNJ1P48048 391 aa20.11■□□□□ 0.81
VPS28-206ENST00000526734 MAP7Q14244 749 aa20.11■□□□□ 0.81
VPS28-206ENST00000526734 FASTKD1Q53R41 847 aaKnown RBP20.11■□□□□ 0.81
VPS28-206ENST00000526734 MPP5Q8N3R9 675 aa20.11■□□□□ 0.81
VPS28-206ENST00000526734 CLDN19Q8N6F1 224 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms