RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 TPRG1Q6ZUI0 275 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 IKBIPQ70UQ0 350 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 HACE1Q8IYU2 909 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 ANKRD52Q8NB46 1076 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 RDM1Q8NG50 284 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 PPP4R1Q8TF05 950 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 TMEM190Q8WZ59 177 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 SMPDL3BQ92485 455 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 TAF15Q92804 592 aaKnown RBP eCLIP3.68□□□□□ -1.82
CD44-217ENST00000525348 CMTM3Q96MX0 182 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 ZNF396Q96N95 335 aaPredicted RBP3.68□□□□□ -1.82
CD44-217ENST00000525348 SRSF8Q9BRL6 282 aaKnown RBP3.68□□□□□ -1.82
CD44-217ENST00000525348 BARHL1Q9BZE3 327 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 TMX4Q9H1E5 349 aaPredicted RBP3.68□□□□□ -1.82
CD44-217ENST00000525348 RAD21L1Q9H4I0 556 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 SLC38A7Q9NVC3 462 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 DBNLQ9UJU6 430 aaKnown RBP3.68□□□□□ -1.82
CD44-217ENST00000525348 RUSC2Q8N2Y8 1516 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 ZNF608Q9ULD9 1512 aaPredicted RBP3.68□□□□□ -1.82
CD44-217ENST00000525348 FLT1P17948 1338 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 IL16Q14005 1332 aa3.68□□□□□ -1.82
CD44-217ENST00000525348 A0A087X0M5 115 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 A0A1B0GX30 115 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 H0YIN7 160 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 PES1O00541 588 aaKnown RBP3.67□□□□□ -1.82
CD44-217ENST00000525348 ZBTB43O43298 467 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 SERPINB2P05120 415 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 IGHV4-38-2P0DP08 117 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 GNB3P16520 340 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 CBLP22681 906 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 PPARGP37231 505 aaPredicted RBP3.67□□□□□ -1.82
CD44-217ENST00000525348 CAMPP49913 170 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 THOP1P52888 689 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 ERVK11-1P61568 191 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 LRMPQ12912 555 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 E2F5Q15329 346 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 MEP1AQ16819 746 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 ZSCAN23Q3MJ62 389 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 SARM1Q6SZW1 724 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 MTERF4Q7Z6M4 381 aaKnown RBP3.67□□□□□ -1.82
CD44-217ENST00000525348 USP6NLQ92738 828 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 FRAT1Q92837 279 aaPredicted RBP3.67□□□□□ -1.82
CD44-217ENST00000525348 SLC22A12Q96S37 553 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 LZTS2Q9BRK4 669 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 HGH1Q9BTY7 390 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 TEX13AQ9BXU3 409 aaPredicted RBP3.67□□□□□ -1.82
CD44-217ENST00000525348 TSPYL1Q9H0U9 437 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 SLA2Q9H6Q3 261 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 MED4Q9NPJ6 270 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 KCNK7Q9Y2U2 307 aa3.67□□□□□ -1.82
CD44-217ENST00000525348 A0A087X002 238 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 ANKRD18BA2A2Z9 1011 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 PGPEP1LA6NFU8 196 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 HS6ST1O60243 411 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 TPM3P06753 285 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 SRPRAP08240 638 aaKnown RBP3.66□□□□□ -1.82
CD44-217ENST00000525348 VEGFCP49767 419 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 NAP1L1P55209 391 aaKnown RBP3.66□□□□□ -1.82
CD44-217ENST00000525348 HMGN5P82970 282 aaKnown RBP3.66□□□□□ -1.82
CD44-217ENST00000525348 PPP2R2BQ00005 443 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 IKQ13123 557 aaPredicted RBP3.66□□□□□ -1.82
CD44-217ENST00000525348 PRKAA1Q13131 559 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 C16orf87Q6PH81 154 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 MFSD6Q6ZSS7 791 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 ZSCAN30Q86W11 494 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 IQCF2Q8IXL9 164 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 CRYBG2Q8N1P7 616 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 OLIG1Q8TAK6 271 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 SEMA4DQ92854 862 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 LRR1Q96L50 414 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 ZNF582Q96NG8 517 aaPredicted RBP3.66□□□□□ -1.82
CD44-217ENST00000525348 DDOQ99489 341 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 KAT14Q9H8E8 782 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 ADPRHL2Q9NX46 363 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 HOXC10Q9NYD6 342 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 CGNQ9P2M7 1197 aaKnown RBP3.66□□□□□ -1.82
CD44-217ENST00000525348 FBXL17Q9UF56 701 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 C2CD2Q9Y426 696 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 CMAHPQ9Y471 501 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 EIF4G3O43432 1585 aaKnown RBP3.66□□□□□ -1.82
CD44-217ENST00000525348 FANCD2Q9BXW9 1451 aa3.66□□□□□ -1.82
CD44-217ENST00000525348 URB2Q14146 1524 aaKnown RBP3.65□□□□□ -1.82
CD44-217ENST00000525348 HECW2Q9P2P5 1572 aa3.65□□□□□ -1.82
CD44-217ENST00000525348 PI4KAP2A4QPH2 592 aa3.65□□□□□ -1.83
CD44-217ENST00000525348 ERICH4A6NGS2 130 aa3.65□□□□□ -1.83
CD44-217ENST00000525348 HHLA1C9JL84 531 aa3.65□□□□□ -1.83
CD44-217ENST00000525348 TMCC2O75069 709 aa3.65□□□□□ -1.83
CD44-217ENST00000525348 TPPPO94811 219 aa3.65□□□□□ -1.83
CD44-217ENST00000525348 SCGB1D1O95968 90 aa3.65□□□□□ -1.83
CD44-217ENST00000525348 TMEM11P17152 192 aa3.65□□□□□ -1.83
CD44-217ENST00000525348 GNAZP19086 355 aa3.65□□□□□ -1.83
CD44-217ENST00000525348 TNFAIP3P21580 790 aa3.65□□□□□ -1.83
CD44-217ENST00000525348 CASQ1P31415 396 aa3.65□□□□□ -1.83
CD44-217ENST00000525348 GARSP41250 739 aaKnown RBP3.65□□□□□ -1.83
CD44-217ENST00000525348 MAGEA8P43361 318 aa3.65□□□□□ -1.83
CD44-217ENST00000525348 DCAF7P61962 342 aa3.65□□□□□ -1.83
CD44-217ENST00000525348 DLG2Q15700 870 aa3.65□□□□□ -1.83
CD44-217ENST00000525348 HSP90B2PQ58FF3 399 aa3.65□□□□□ -1.83
CD44-217ENST00000525348 ZDHHC20Q5W0Z9 365 aa3.65□□□□□ -1.83
CD44-217ENST00000525348 KLHL10Q6JEL2 608 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms