RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 ST14Q9Y5Y6 855 aa11.79□□□□□ -0.52
NUP54-202ENST00000502850 AGAP14A8MT82 685 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 K7EPI3 171 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 ARNTLO00327 626 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 GAPDHSO14556 408 aaPredicted RBP11.78□□□□□ -0.52
NUP54-202ENST00000502850 SMAD6O43541 496 aaKnown RBP11.78□□□□□ -0.52
NUP54-202ENST00000502850 LILRB3O75022 631 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 ADH1AP07327 375 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 CTSAP10619 480 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 BPIP17213 487 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 HTR1EP28566 365 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 PRDX3P30048 256 aaKnown RBP11.78□□□□□ -0.52
NUP54-202ENST00000502850 TXNL4AP83876 142 aaKnown RBP11.78□□□□□ -0.52
NUP54-202ENST00000502850 CDKN3Q16667 212 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 GPRC6AQ5T6X5 926 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 PPP4R4Q6NUP7 873 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 LETMD1Q6P1Q0 360 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 TMC8Q8IU68 726 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 GALNT4Q8N4A0 578 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 TNIP2Q8NFZ5 429 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 OR4F6Q8NGB9 312 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 OR52B6Q8NGF0 335 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 SLCO4A1Q96BD0 722 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 EID2BQ96D98 161 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 ASIC4Q96FT7 647 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 SCRN2Q96FV2 425 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 ZNF641Q96N77 438 aaPredicted RBP11.78□□□□□ -0.52
NUP54-202ENST00000502850 SPATA16Q9BXB7 569 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 LRRC3Q9BY71 257 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 SLC2A11Q9BYW1 496 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 CPEB1Q9BZB8 566 aaKnown RBP11.78□□□□□ -0.52
NUP54-202ENST00000502850 CD244Q9BZW8 370 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 COQ10BQ9H8M1 238 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 IPPKQ9H8X2 491 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 VCX3AQ9NNX9 186 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 ASAH2Q9NR71 780 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 ZDHHC3Q9NYG2 299 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 THEGQ9P2T0 379 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 MAGEL2Q9UJ55 1249 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 A0A1B0GTL3 188 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 IQCF5A8MTL0 148 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 K7ERQ8 282 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 OR7A17O14581 309 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 ARPC2O15144 300 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 TRIM16O95361 564 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 CLDN7O95471 211 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 CLPTM1O96005 669 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 OR56A5P0C7T3 313 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 EBLN1P0CF75 366 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 PEX19P40855 299 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 GSK3BP49841 420 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 UFM1P61960 85 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 POLR2LP62875 67 aaKnown RBP11.78□□□□□ -0.52
NUP54-202ENST00000502850 CYP4F8P98187 520 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 CDKL1Q00532 357 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 ECT2LQ008S8 904 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 LIPEQ05469 1076 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 TRAF3Q13114 568 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 PPIGQ13427 754 aaKnown RBP eCLIP11.78□□□□□ -0.52
NUP54-202ENST00000502850 DMC1Q14565 340 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 CHRNA6Q15825 494 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 FXNQ16595 210 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 TIGD2Q4W5G0 525 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 PITRM1Q5JRX3 1037 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 ZNF697Q5TEC3 545 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 C22orf39Q6P5X5 142 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 ZBTB49Q6ZSB9 765 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 RTL10Q7L3V2 364 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 HID1Q8IV36 788 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 CHERPQ8IWX8 916 aaKnown RBP11.78□□□□□ -0.52
NUP54-202ENST00000502850 BBS7Q8IWZ6 715 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 TBC1D21Q8IYX1 336 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 MFSD2AQ8NA29 543 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 OR2T11Q8NH01 316 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 DNAJB8Q8NHS0 232 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 OSCP1Q8WVF1 389 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 ECHDC3Q96DC8 303 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 MCCC1Q96RQ3 725 aaPredicted RBP11.78□□□□□ -0.52
NUP54-202ENST00000502850 YME1L1Q96TA2 773 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 COPS8Q99627 209 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 C1orf50Q9BV19 199 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 NTMT1Q9BV86 223 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 PAPOLBQ9NRJ5 636 aaKnown RBP11.78□□□□□ -0.52
NUP54-202ENST00000502850 RAD18Q9NS91 495 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 ASIC5Q9NY37 505 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 COMMD3-BMI1R4GMX3 469 aa11.78□□□□□ -0.52
NUP54-202ENST00000502850 SOBPA7XYQ1 873 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 LEFTY2O00292 366 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 LSM1O15116 133 aaKnown RBP11.77□□□□□ -0.53
NUP54-202ENST00000502850 KPNA5O15131 536 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 TGM5O43548 720 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 GMNNO75496 209 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 PRAMEF12O95522 483 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 C8AP07357 584 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 C8GP07360 202 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 ANXA5P08758 320 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 SRCP12931 536 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 EPB42P16452 691 aa11.77□□□□□ -0.53
NUP54-202ENST00000502850 HOXB6P17509 224 aaKnown RBP11.77□□□□□ -0.53
NUP54-202ENST00000502850 CD70P32970 193 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms