RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 SPDL1Q96EA4 605 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 TMEM106CQ9BVX2 250 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 CD244Q9BZW8 370 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 IL1RL2Q9HB29 575 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 WWOXQ9NZC7 414 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 ABCD2Q9UBJ2 740 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 CD84Q9UIB8 345 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 KATNA1O75449 491 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 CCR7P32248 378 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 UFM1P61960 85 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 ATP6AP1LQ52LC2 224 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 PRMT9Q6P2P2 845 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 TMEM126BQ8IUX1 230 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 FNDC5Q8NAU1 212 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 PHOSPHO2Q8TCD6 241 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 LRGUKQ96M69 825 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 HEPHQ9BQS7 1158 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 SLC2A11Q9BYW1 496 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 COPS7BQ9H9Q2 264 aaPredicted RBP20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 PKD2L2Q9NZM6 624 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 A0A1W2PP18 115 aa20.73■□□□□ 0.91
CCDC88B-208ENST00000492980 TTC34A8MYJ7 566 aa20.73■□□□□ 0.91
CCDC88B-208ENST00000492980 NME4O00746 187 aa20.73■□□□□ 0.91
CCDC88B-208ENST00000492980 SYNCRIPO60506 623 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-208ENST00000492980 GDF5P43026 501 aa20.73■□□□□ 0.91
CCDC88B-208ENST00000492980 CBX2Q14781 532 aaPredicted RBP20.73■□□□□ 0.91
CCDC88B-208ENST00000492980 GRAMD1BQ3KR37 738 aa20.73■□□□□ 0.91
CCDC88B-208ENST00000492980 MILR1Q7Z6M3 343 aa20.73■□□□□ 0.91
CCDC88B-208ENST00000492980 GATA6Q92908 595 aa20.73■□□□□ 0.91
CCDC88B-208ENST00000492980 GMPR2Q9P2T1 348 aaKnown RBP20.73■□□□□ 0.91
CCDC88B-208ENST00000492980 OPTCQ9UBM4 332 aa20.73■□□□□ 0.91
CCDC88B-208ENST00000492980 MBD1Q9UIS9 605 aaPredicted RBP20.73■□□□□ 0.91
CCDC88B-208ENST00000492980 RWDD3Q9Y3V2 267 aa20.73■□□□□ 0.91
CCDC88B-208ENST00000492980 ASPDHA6ND91 283 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 LEFTY1O75610 366 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 SLC22A3O75751 556 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 ARHGEF15O94989 841 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 OR56A5P0C7T3 313 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 VIPR1P32241 457 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 KCNK10P57789 538 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 ARHGEF7Q14155 803 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 CHCHD4Q8N4Q1 142 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 NR1H4Q96RI1 486 aaPredicted RBP20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 PKP2Q99959 881 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 HEBP1Q9NRV9 189 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 GID8Q9NWU2 228 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 ZIM2Q9NZV7 527 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 DTNAQ9Y4J8 743 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 MYO7AQ13402 2215 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 DNAJA2O60884 412 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 CYP2A6P11509 494 aaPredicted RBP20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 ZNF30P17039 623 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 CAPRIN1Q14444 709 aaKnown RBP20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 ABRAXAS2Q15018 415 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 MBOAT1Q6ZNC8 495 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 VPS33AQ96AX1 596 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 ZNF707Q96C28 371 aaPredicted RBP20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 LRRC58Q96CX6 371 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 HBEGFQ99075 208 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 ZMYM5Q9UJ78 669 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 ANGPTL3Q9Y5C1 460 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 PDE4DIPQ5VU43 2346 aa20.72■□□□□ 0.91
CCDC88B-208ENST00000492980 PLXNA2O75051 1894 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 TSPAN11A1L157 253 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 A6NHS1 94 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 C5orf67F2Z3F1 127 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 K7EPI3 171 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 EIF3FO00303 357 aaPredicted RBP20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 LSM1O15116 133 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 AOAHP28039 575 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 HMOX2P30519 316 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 RHDQ02161 417 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 FOXM1Q08050 763 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 GBX1Q14549 363 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 MAP7D1Q3KQU3 841 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 ARSIQ5FYB1 569 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 IL23RQ5VWK5 629 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 METTL2BQ6P1Q9 378 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 TMEM154Q6P9G4 183 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 HSD11B1LQ7Z5J1 315 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 SLC15A3Q8IY34 581 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 LRRC3BQ96PB8 259 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 SPATA16Q9BXB7 569 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 CXorf56Q9H5V9 222 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 YY1AP1Q9H869 796 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 TCRBV3S1A0A5B6 114 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 PER2O15055 1255 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 EEDO75530 441 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 RNASEH2AO75792 299 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 SLC6A2P23975 617 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 IL12AP29459 219 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 POLR2JP52435 117 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 RARS2Q5T160 578 aaKnown RBP20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 DET1Q7L5Y6 550 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 MTG2Q9H4K7 406 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 TMEM45AQ9NWC5 275 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 SMOXQ9NWM0 555 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 CMTM6Q9NX76 183 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 FBXO10Q9UK96 956 aa20.71■□□□□ 0.91
CCDC88B-208ENST00000492980 ZNF197O14709 1029 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms