RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ATP13A5Q4VNC0 1218 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 ZNF805Q5CZA5 627 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 PGM2L1Q6PCE3 622 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 HSD11B1LQ7Z5J1 315 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 PDSS2Q86YH6 399 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 CLDN19Q8N6F1 224 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 PTGR2Q8N8N7 351 aaPredicted RBP11.98□□□□□ -0.49
HDAC6-230ENST00000488543 FAM156AQ8NDB6 213 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 FUBP1Q96AE4 644 aaKnown RBP11.98□□□□□ -0.49
HDAC6-230ENST00000488543 GBP5Q96PP8 586 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 CLPBQ9H078 707 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 ITM2BQ9Y287 266 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 DNAH14Q0VDD8 3507 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 USP34Q70CQ2 3546 aa11.98□□□□□ -0.49
HDAC6-230ENST00000488543 LRRC14BA6NHZ5 514 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 SHISA7A6NL88 538 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 H3BNX3 289 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 UBFD1O14562 309 aaKnown RBP11.97□□□□□ -0.49
HDAC6-230ENST00000488543 CCNT2O60583 730 aaKnown RBP11.97□□□□□ -0.49
HDAC6-230ENST00000488543 SNUPNO95149 360 aaKnown RBP11.97□□□□□ -0.49
HDAC6-230ENST00000488543 FESP07332 822 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 PPARGP37231 505 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-230ENST00000488543 IL2P60568 153 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 HERVK_113P63132 956 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 PDCD2Q16342 344 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-230ENST00000488543 PTRHD1Q6GMV3 140 aaKnown RBP11.97□□□□□ -0.49
HDAC6-230ENST00000488543 KIAA1211LQ6NV74 962 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 MACC1Q6ZN28 852 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 PARS2Q7L3T8 475 aaKnown RBP11.97□□□□□ -0.49
HDAC6-230ENST00000488543 STAG3L4Q8TBR4 150 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 PIP4K2CQ8TBX8 421 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 ACTRT2Q8TDY3 377 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 STON2Q8WXE9 905 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 LRIG1Q96JA1 1093 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 ERVK-6Q9BXR3 956 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 SARS2Q9NP81 518 aaKnown RBP11.97□□□□□ -0.49
HDAC6-230ENST00000488543 CD84Q9UIB8 345 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 GNPTGQ9UJJ9 305 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 IGLV3-16A0A075B6K0 115 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 E5RI56 91 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 CYP2A6P11509 494 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-230ENST00000488543 ZNF30P17039 623 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 TCN1P20061 433 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-230ENST00000488543 HK3P52790 923 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 B4GALNT1Q00973 533 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 GALNT1Q10472 559 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-230ENST00000488543 GK3PQ14409 553 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 HABP4Q5JVS0 413 aaKnown RBP11.97□□□□□ -0.49
HDAC6-230ENST00000488543 SEL1L3Q68CR1 1132 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 NXNQ6DKJ4 435 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 UGT3A1Q6NUS8 523 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 DPPA4Q7L190 304 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 HCAR2Q8TDS4 363 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 ARRDC3Q96B67 414 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 PDLIM5Q96HC4 596 aaKnown RBP11.97□□□□□ -0.49
HDAC6-230ENST00000488543 ZDHHC3Q9NYG2 299 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 VTI1BQ9UEU0 232 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 RNF112Q9ULX5 631 aa11.97□□□□□ -0.49
HDAC6-230ENST00000488543 SUPT3HB4E1H0 165 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 SLCO1B7G3V0H7 640 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 BTN3A1O00481 513 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 SPINT1O43278 529 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 KLK8O60259 260 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 SUPT3HO75486 399 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 OR6B1O95007 311 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 SIX3O95343 332 aaPredicted RBP11.96□□□□□ -0.49
HDAC6-230ENST00000488543 ITGB6P18564 788 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 ELAVL3Q14576 367 aaKnown RBP11.96□□□□□ -0.49
HDAC6-230ENST00000488543 PFKFB4Q16877 469 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 LEXMQ3ZCV2 418 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 SH2D4BQ5SQS7 431 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 ZDHHC20Q5W0Z9 365 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 CUZD1Q86UP6 607 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 FBXW8Q8N3Y1 598 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 OR8D1Q8WZ84 308 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 RCN3Q96D15 328 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 SLC6A17Q9H1V8 727 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 ABCG8Q9H221 673 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 TCF7L2Q9NQB0 619 aa11.96□□□□□ -0.49
HDAC6-230ENST00000488543 CROCCQ5TZA2 2017 aa11.96□□□□□ -0.5
HDAC6-230ENST00000488543 AHCYL1O43865 530 aa11.96□□□□□ -0.5
HDAC6-230ENST00000488543 FKBP6O75344 327 aa11.96□□□□□ -0.5
HDAC6-230ENST00000488543 PGM3O95394 542 aa11.96□□□□□ -0.5
HDAC6-230ENST00000488543 XRCC1P18887 633 aaPredicted RBP11.96□□□□□ -0.5
HDAC6-230ENST00000488543 PIK3R1P27986 724 aa11.96□□□□□ -0.5
HDAC6-230ENST00000488543 MMP12P39900 470 aa11.96□□□□□ -0.5
HDAC6-230ENST00000488543 DPP6P42658 865 aa11.96□□□□□ -0.5
HDAC6-230ENST00000488543 THOP1P52888 689 aa11.96□□□□□ -0.5
HDAC6-230ENST00000488543 MRPS22P82650 360 aaKnown RBP11.96□□□□□ -0.5
HDAC6-230ENST00000488543 ARHGEF7Q14155 803 aa11.96□□□□□ -0.5
HDAC6-230ENST00000488543 LSM12Q3MHD2 195 aaKnown RBP11.96□□□□□ -0.5
HDAC6-230ENST00000488543 NUDT18Q6ZVK8 323 aa11.96□□□□□ -0.5
HDAC6-230ENST00000488543 CMTM5Q96DZ9 223 aa11.96□□□□□ -0.5
HDAC6-230ENST00000488543 TRMOQ9BU70 441 aa11.96□□□□□ -0.5
HDAC6-230ENST00000488543 PKD2L2Q9NZM6 624 aa11.96□□□□□ -0.5
HDAC6-230ENST00000488543 NFKBIL1Q9UBC1 381 aaPredicted RBP11.96□□□□□ -0.5
HDAC6-230ENST00000488543 SORCS3Q9UPU3 1222 aa11.96□□□□□ -0.5
HDAC6-230ENST00000488543 SUPT7LO94864 414 aa11.95□□□□□ -0.5
HDAC6-230ENST00000488543 SLC25A14O95258 325 aaPredicted RBP11.95□□□□□ -0.5
HDAC6-230ENST00000488543 PRNPP04156 253 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms