RNA–Protein interactions for RNA: ENST00000480104.5

USP11-208, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 697 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-208ENST00000480104 NEUROD4Q9HD90 331 aa11.49□□□□□ -0.57
USP11-208ENST00000480104 UBE2TQ9NPD8 197 aaPredicted RBP11.49□□□□□ -0.57
USP11-208ENST00000480104 PTGFRNQ9P2B2 879 aa11.49□□□□□ -0.57
USP11-208ENST00000480104 TMEM59LQ9UK28 342 aa11.49□□□□□ -0.57
USP11-208ENST00000480104 L3MBTL1Q9Y468 752 aa11.49□□□□□ -0.57
USP11-208ENST00000480104 OR6C74A6NCV1 312 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 ZRANB2O95218 330 aaKnown RBP eCLIP11.48□□□□□ -0.57
USP11-208ENST00000480104 TSPAN12O95859 305 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 CDH3P22223 829 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 IL4RP24394 825 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 CHRNB4P30926 498 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 PAPOLAP51003 745 aaKnown RBP11.48□□□□□ -0.57
USP11-208ENST00000480104 NKX6-1P78426 367 aaPredicted RBP11.48□□□□□ -0.57
USP11-208ENST00000480104 RUNX1T1Q06455 604 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 CETN1Q12798 172 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 NKAIN1Q4KMZ8 207 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 C2CD6Q53TS8 623 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 FAM20CQ8IXL6 584 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 MARVELD2Q8N4S9 558 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 CPSF7Q8N684 471 aaKnown RBP11.48□□□□□ -0.57
USP11-208ENST00000480104 ASB5Q8WWX0 329 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 CCDC47Q96A33 483 aaKnown RBP11.48□□□□□ -0.57
USP11-208ENST00000480104 MESP1Q9BRJ9 268 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 TIMM29Q9BSF4 260 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 AP1M1Q9BXS5 423 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 SCAND2PQ9GZW5 306 aaPredicted RBP11.48□□□□□ -0.57
USP11-208ENST00000480104 SYTL2Q9HCH5 934 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 KIAA1468Q9P260 1216 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 DHCR7Q9UBM7 475 aaKnown RBP11.48□□□□□ -0.57
USP11-208ENST00000480104 FHOD1Q9Y613 1164 aa11.48□□□□□ -0.57
USP11-208ENST00000480104 CHD3Q12873 2000 aaKnown RBP11.47□□□□□ -0.57
USP11-208ENST00000480104 NPIPA5E9PKD4 350 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 KMOO15229 486 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 PGLSO95336 258 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 PRAMEF1O95521 474 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 IDSP22304 550 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 EPHB1P54762 984 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 HSF1Q00613 529 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 SYCP1Q15431 976 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 KRTCAP3Q53RY4 240 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 HENMT1Q5T8I9 393 aaKnown RBP11.47□□□□□ -0.57
USP11-208ENST00000480104 SHEQ5VZ18 495 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 RHBDD2Q6NTF9 364 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 ARMC6Q6NXE6 501 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 NAPRTQ6XQN6 538 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 ARHGAP36Q6ZRI8 547 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 C11orf96Q7Z7L8 435 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 CHERPQ8IWX8 916 aaKnown RBP11.47□□□□□ -0.57
USP11-208ENST00000480104 CLYBLQ8N0X4 340 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 EID3Q8N140 333 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 EHBP1Q8NDI1 1231 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 OR11G2Q8NGC1 345 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 PROKR1Q8TCW9 393 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 C18orf8Q96DM3 657 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 PSKH2Q96QS6 385 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 SP110Q9HB58 689 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 NOD2Q9HC29 1040 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 SEPT11Q9NVA2 429 aaKnown RBP11.47□□□□□ -0.57
USP11-208ENST00000480104 NPIPA1Q9UND3 350 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 RNF6Q9Y252 685 aa11.47□□□□□ -0.57
USP11-208ENST00000480104 NBEAL2Q6ZNJ1 2754 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 ARHGAP42A6NI28 874 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 CHUKO15111 745 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 VEGFDO43915 354 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 KLK8O60259 260 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 USP1O94782 785 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 YEATS4O95619 227 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 WDPCPO95876 746 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 MYL1P05976 194 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 ST6GAL1P15907 406 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 KRT9P35527 623 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 HALP42357 657 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 GABRB2P47870 512 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 DLX5P56178 289 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 OLIG2Q13516 323 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 GALNT3Q14435 633 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 RPE65Q16518 533 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 GJB7Q6PEY0 223 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 ADGRG6Q86SQ4 1221 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 LRRTM4Q86VH4 590 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 ZNF547Q8IVP9 402 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 GPR135Q8IZ08 494 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 SIRT6Q8N6T7 355 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 SUN3Q8TAQ9 357 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 BRIX1Q8TDN6 353 aaKnown RBP11.46□□□□□ -0.57
USP11-208ENST00000480104 PIH1D2Q8WWB5 315 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 PSMF1Q92530 271 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 SLC39A8Q9C0K1 460 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 KLHL25Q9H0H3 589 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 CATSPERBQ9H7T0 1116 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 ZNF160Q9HCG1 818 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 SLC22A11Q9NSA0 550 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 DTLQ9NZJ0 730 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 NOCTQ9UK39 431 aaKnown RBP11.46□□□□□ -0.57
USP11-208ENST00000480104 POMT2Q9UKY4 750 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 MRPS2Q9Y399 296 aaKnown RBP11.46□□□□□ -0.57
USP11-208ENST00000480104 PPIL1Q9Y3C6 166 aa11.46□□□□□ -0.57
USP11-208ENST00000480104 PRRG2O14669 202 aa11.45□□□□□ -0.58
USP11-208ENST00000480104 P4HA2O15460 535 aa11.45□□□□□ -0.58
USP11-208ENST00000480104 POLR2CP19387 275 aaPredicted RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms