RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 A0A0A6YYK5 440 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 A0A1W2PNU3 283 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 A0A1W2PQM1 296 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 CDRT15L2A8MXV6 281 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 PLD2O14939 933 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 CASC3O15234 703 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 INPP4BO15327 924 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 MTSS1O43312 755 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 CST8O60676 142 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 TNFSF15O95150 251 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 IPO7O95373 1038 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 ASMTLO95671 621 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 FUCA1P04066 466 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 FGF1P05230 155 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 ITGA2BP08514 1039 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 AK4P27144 223 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 CCKBRP32239 447 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 ACTR1BP42025 376 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 POLD2P49005 469 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 SPINT3P49223 89 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 SLURP1P55000 103 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 UCNP55089 124 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 MAZP56270 477 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 DCDC1P59894 354 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 ACTR1AP61163 376 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 TLE3Q04726 772 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 GALNT3Q14435 633 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 NR1D2Q14995 579 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 PRKD1Q15139 912 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 TAZQ16635 292 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 BBS9Q3SYG4 887 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 MAP9Q49MG5 647 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 PYCR3Q53H96 274 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 TEX44Q53QW1 395 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 HENMT1Q5T8I9 393 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 KAZNQ674X7 775 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 CCDC70Q6NSX1 233 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 C11orf63Q6NUN7 778 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 MFSD7Q6UXD7 560 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 RAB11FIP2Q7L804 512 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 KDELC2Q7Z4H8 507 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 B3GNT8Q7Z7M8 397 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 CLEC14AQ86T13 490 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 DAAM2Q86T65 1068 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 TRIM74Q86UV6 250 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 C17orf82Q86X59 251 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 GALNT13Q8IUC8 556 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 CCDC50Q8IVM0 306 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 SFTPA2Q8IWL1 248 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 KATNAL2Q8IYT4 538 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 RCOR2Q8IZ40 523 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 FBXO39Q8N4B4 442 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 TFB1MQ8WVM0 346 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 KCNE4Q8WWG9 221 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 P3H4Q92791 437 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 TMEM159Q96B96 161 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 TCTN2Q96GX1 697 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 CRELD1Q96HD1 420 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 PRR11Q96HE9 360 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 NAF1Q96HR8 494 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 COX14Q96I36 57 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 RBM41Q96IZ5 413 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 FCRL3Q96P31 734 aaPredicted RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 PANX2Q96RD6 677 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 SRPK1Q96SB4 655 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 AGAP2Q99490 1192 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 DPH1Q9BZG8 443 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 SLC25A51Q9H1U9 297 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 FAM83DQ9H4H8 585 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 PRORYQ9H606 182 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 RMI1Q9H9A7 625 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 MAGEE1Q9HCI5 957 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 TMEM98Q9Y2Y6 226 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 ALG6Q9Y672 507 aa6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 ZNF106Q9H2Y7 1883 aaKnown RBP6.73□□□□□ -1.33
CCDC88A-213ENST00000476903 hCG_1818297A0A087WSY0 165 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 PMS2P1A4D2B8 440 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 ANKRD33BA6NCL7 494 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 FADS2P1A8MWK0 482 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 HACD1B0YJ81 288 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 KLK10O43240 276 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 DNAJA2O60884 412 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 DNAJC6O75061 913 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 ZRANB2O95218 330 aaKnown RBP eCLIP6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 NDST3O95803 873 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 MT-CYBP00156 380 aaPredicted RBP6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 SLC4A1P02730 911 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 ATP1A1P05023 1023 aaKnown RBP6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 JMJD7P0C870 316 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 PECAM1P16284 738 aaPredicted RBP6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 TNFRSF1AP19438 455 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 PTPN3P26045 913 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 ALDH4A1P30038 563 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 UGT1A5P35504 534 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 TNNT3P45378 269 aaPredicted RBP6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 GPR3P46089 330 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 ZNF75DP51815 510 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 TMPRSS3P57727 454 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 OR1D5P58170 312 aa6.72□□□□□ -1.33
CCDC88A-213ENST00000476903 B4GALNT1Q00973 533 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms