RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 CRLS1Q9UJA2 301 aa13.77□□□□□ -0.21
UPF3A-204ENST00000475218 ASH1LQ9NR48 2969 aaKnown RBP13.76□□□□□ -0.21
UPF3A-204ENST00000475218 GOLGA6L3A6NEY3 463 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 B8ZZF3 427 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 NKX2-8O15522 239 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 RASSF9O75901 435 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 POLBP06746 335 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 FGF5P12034 268 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 ATP1B2P14415 290 aaPredicted RBP13.76□□□□□ -0.21
UPF3A-204ENST00000475218 ITGALP20701 1170 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 ACRV1P26436 265 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 MAP4P27816 1152 aaKnown RBP13.76□□□□□ -0.21
UPF3A-204ENST00000475218 GRIA1P42261 906 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 PDE1BQ01064 536 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 ABHD18Q0P651 414 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 SERPINA9Q86WD7 417 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 CLDN19Q8N6F1 224 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 ULK4Q96C45 1275 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 ZDHHC12Q96GR4 267 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 CDKN2AIPNLQ96HQ2 116 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 ELMO2Q96JJ3 720 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 COPS8Q99627 209 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 MAP3K3Q99759 626 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 OR52A5Q9H2C5 316 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 KIR3DX1Q9H7L2 352 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 STARD5Q9NSY2 213 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 ZDHHC3Q9NYG2 299 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 ACSL5Q9ULC5 683 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 CCDC78A2IDD5 438 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 OR5K3A6NET4 321 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 OR51F1A6NGY5 319 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 ZNF189O75820 626 aaPredicted RBP13.76□□□□□ -0.21
UPF3A-204ENST00000475218 ZIC2O95409 532 aaPredicted RBP13.76□□□□□ -0.21
UPF3A-204ENST00000475218 ETS1P14921 441 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 HADHAP40939 763 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 MAP7Q14244 749 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 DBN1Q16643 649 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 GPR33Q49SQ1 333 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 SLC13A5Q86YT5 568 aaPredicted RBP13.76□□□□□ -0.21
UPF3A-204ENST00000475218 CFAP206Q8IYR0 622 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 ZSCAN1Q8NBB4 408 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 OR52K1Q8NGK4 314 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 HM13Q8TCT9 377 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 C1orf54Q8WWF1 131 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 ULBP3Q9BZM4 244 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 GUCA1BQ9UMX6 200 aa13.76□□□□□ -0.21
UPF3A-204ENST00000475218 MRPS18BQ9Y676 258 aaKnown RBP13.76□□□□□ -0.21
UPF3A-204ENST00000475218 SETXQ7Z333 2677 aaKnown RBP13.75□□□□□ -0.21
UPF3A-204ENST00000475218 OAS2P29728 719 aaKnown RBP13.75□□□□□ -0.21
UPF3A-204ENST00000475218 PDHA2P29803 388 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 NFKB2Q00653 900 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 IL11RAQ14626 422 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 P3H1Q32P28 736 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 CCDC38Q502W7 563 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 ATP1A1-AS1Q5TC04 95 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 MEI1Q5TIA1 1274 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 FBXO38Q6PIJ6 1188 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 GALNT6Q8NCL4 622 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 OR13J1Q8NGT2 312 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 STYXQ8WUJ0 223 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 ZNF778Q96MU6 729 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 COG4Q9H9E3 785 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 AKIRIN1Q9H9L7 192 aaPredicted RBP13.75□□□□□ -0.21
UPF3A-204ENST00000475218 GPN2Q9H9Y4 310 aaPredicted RBP13.75□□□□□ -0.21
UPF3A-204ENST00000475218 ETNK1Q9HBU6 452 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 PRSS21Q9Y6M0 314 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 RPS6KL1Q9Y6S9 549 aa13.75□□□□□ -0.21
UPF3A-204ENST00000475218 UBR5O95071 2799 aaPredicted RBP13.74□□□□□ -0.21
UPF3A-204ENST00000475218 C17orf113A0A1B0GUU1 675 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 KLHL33A6NCF5 533 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 PYCARD-AS1I3L0S3 204 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 SPAG6O75602 509 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 KIAA0754O94854 1291 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 SUN1O94901 812 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 SLC35G4P0C7Q5 338 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 EBLN1P0CF75 366 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 FOXN2P32314 431 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 ARCN1P48444 511 aaKnown RBP13.74□□□□□ -0.21
UPF3A-204ENST00000475218 KPNA2P52292 529 aaKnown RBP13.74□□□□□ -0.21
UPF3A-204ENST00000475218 NFATC3Q12968 1075 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 SEPT6Q14141 434 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 KCTD19Q17RG1 926 aaPredicted RBP13.74□□□□□ -0.21
UPF3A-204ENST00000475218 ZRANB3Q5FWF4 1079 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 ZFPM2Q8WW38 1151 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 UBXN4Q92575 508 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 DCUN1D1Q96GG9 259 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 HRASLS2Q9NWW9 162 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 SLC2A6Q9UGQ3 507 aa13.74□□□□□ -0.21
UPF3A-204ENST00000475218 CCDC162PA2VCL2 907 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 OR6C74A6NCV1 312 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 ZNF891A8MT65 544 aaPredicted RBP13.73□□□□□ -0.21
UPF3A-204ENST00000475218 PTMAP06454 111 aaKnown RBP13.73□□□□□ -0.21
UPF3A-204ENST00000475218 FURINP09958 794 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 ZSCAN5DPP0CG00 497 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 PRKAR1AP10644 381 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 PREPP48147 710 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 CDC20Q12834 499 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 PLCL1Q15111 1095 aa13.73□□□□□ -0.21
UPF3A-204ENST00000475218 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.73□□□□□ -0.21
UPF3A-204ENST00000475218 PWWP2BQ6NUJ5 590 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms